rs1569723

This is a upstream gene variant variant.

GWAS Catalog Trait Associations (8)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

tumor necrosis factor, receptor superfamily, member 5 measurement

Allele C
OR 0.39
p 2.0e-121
N 3,394
Large GWAS
European

Graves disease

Allele A
OR 0.11
p 1.0e-17
N 2,460,657
Large GWAS
multi-ancestry
Sakaue S et al. A cross-population atlas of genetic associations for 220 human phenotypes. Nature Genetics 53(10):1415-1424 (2021)
Allele A
OR 0.16
p 2.0e-12
N 634,085
Large GWAS
multi-ancestry
Allele A
OR 1.20
p 4.0e-9
N 212,453
Large GWAS
East Asian

Fc receptor-like protein 1 measurement

Allele A
OR 0.05
p 9.0e-17
N 47,745
Large GWAS
European

mathematical ability

Allele A
OR 0.01
p 3.0e-14
N 811,539
Large GWAS
European

inflammatory bowel disease

Allele C
OR 1.09
p 1.0e-13
N 34,366
Large GWAS
European

mucocutaneous lymph node syndrome

Allele A
OR 1.42
p 6.0e-9
N 1,729
Large GWAS
East Asian

Research that mentions this SNP (3)

Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B
AssociationN=6,033Jiang DK et al.(2015)· Hepatology

A genome-wide association study of 83 plasma proteins relevant to cardiovascular disease in 3,394 European subjects identified 79 genome-wide significant loci (p<5e-8), with 55 replicating in independent cohorts (n=2,639). Using eQTL analysis and network methods, the authors proposed plausible causal mechanisms for 25 trans-acting loci including post-translational regulation of KITLG by MMP9 and several receptor-ligand pairs. Multiple loci showed evidence of causal association with coronary artery disease risk.

Traits studied:AtherosclerosisCoronary artery diseasePlaque rupturePlasma protein levels (83 cardiovascular disease-related proteins)Thrombosis
Novel Rheumatoid Arthritis Susceptibility Locus at 22q12 Identified in an Extended UK Genome‐Wide Association Study
AssociationN=8,305Gisela Orozco et al.(2014)· Arthritis &amp; Rheumatology

This extended UK genome-wide association study identified a novel rheumatoid arthritis susceptibility locus at 22q12 (rs1043099, P = 6.9 × 10⁻⁹, OR = 0.84) in 3,034 cases and 5,271 controls, and confirmed 16 previously known RA loci, strengthening evidence for genetic contributors to RA in the UK population.

Traits studied:Rheumatoid arthritis
Association of a single‐nucleotide polymorphism in CD40 with the rate of joint destruction in rheumatoid arthritis
AssociationN=956Michael P. M. van der Linden et al.(2009)· Arthritis &amp; Rheumatism

This association study examined whether six genetic variants identified in RA susceptibility studies also influence radiographic joint destruction severity. In ACPA-positive RA patients, rs4810485 in CD40 showed significant association with increased radiographic progression rate (1.12x greater annual Sharp score increase per risk allele, P=0.003), which was independently replicated in the NARAC cohort (P=0.021). This represents the first non-HLA-related genetic severity factor for RA progression that has been replicated across independent cohorts.

Traits studied:Joint destruction severityRadiographic progression in ACPA-positive RARheumatoid arthritis

This variant is in our database but has no known associations or PRS memberships yet.

Gene information from NCBI Gene. Variant classifications from ClinVar.

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