rs1640299

This is a coding sequence variant variant in the DGCR8 gene.

Research that mentions this SNP (5)

Evaluation of genetic variants in microRNA biosynthesis genes and risk of breast cancer in Chinese women
Meta-analysisYue Jiang et al.(2013)· International Journal of Cancer

Meta-analysis of 21 case-control studies examining associations between SNPs in five miRNA biogenesis pathway genes (DROSHA, DGCR8, XPO5, RAN, DICER1) and human cancer risk. Significant associations found with DGCR8 rs417309G>A (OR 1.22, 95% CI 1.04-1.42) and DICER1 rs1057035T>C (OR 1.13, 95% CI 1.05-1.22), with stronger effects in Asian populations. No significant associations observed for DROSHA rs10719, XPO5 rs11077, or RAN variants.

Traits studied:Bladder cancerBreast cancerCancerCervical cancerColorectal cancerEsophageal cancerGastric cancerHead and neck cancerHepatocellular carcinomaLung cancerLymphocytic leukemiaOral cancerRenal cell carcinoma
Potentially functional genetic variants in microRNA processing genes and risk of HBV‐related hepatocellular carcinoma
Meta-analysisN=8,614Li Liu et al.(2013)· Molecular Carcinogenesis

This systematic review and meta-analysis examined associations between SNPs in miRNA biosynthesis genes DROSHA and DGCR8 and cancer risk across 10 case-control studies (4,265 cases, 4,349 controls). The DGCR8 rs417309 SNP showed significant association with elevated overall cancer risk across all genetic models. DROSHA rs10719 and rs6877842 SNPs were associated with cancer risk in specific populations (Asian populations and laryngeal cancer, respectively).

Traits studied:Bladder cancerBreast cancerCancer susceptibilityCervical cancerColorectal cancerEsophageal cancerGastric cancerHead and neck cancerHepatocellular carcinomaLaryngeal cancerLung cancerOral cancerProstate cancerRenal cell carcinomaThyroid cancer
Genetic variation in MicroRNA genes and risk of oral premalignant lesions
AssociationN=272Clague J. et al.(2010)· Molecular Carcinogenesis

A case-control study of 136 oral premalignant lesion (OPL) patients and 136 matched controls examined 31 SNPs in microRNA biogenesis pathway genes. The variant allele of rs7372209 in mir26a-1 increased OPL risk (OR 2.09, 95% CI 1.23-3.56), as did rs3742330 in DICER (OR 2.09, 95% CI 1.03-4.24), while rs197412 in GEMIN3 reduced risk (OR 0.58, 95% CI 0.33-0.99). A combined analysis of five SNPs with borderline significant associations showed a dramatic cumulative effect on OPL risk (P for trend <0.0001), with the high-risk group having 21-fold increased odds.

Traits studied:Oral premalignant lesions
Association of a common AGO1 variant with lung cancer risk: A two‐stage case–control study
Meta-analysisN=8,614Jong‐Sik Kim et al.(2010)· Molecular Carcinogenesis

Meta-analysis of 10 case-control studies (4,265 cancer cases, 4,349 controls) examining seven SNPs in miRNA biosynthesis genes DROSHA and DGCR8 showed that DGCR8 rs417309 (G/A) was significantly associated with increased cancer risk (OR=3.169, 95%CI=1.63-6.146 for AA vs GG; OR=3.026, 95%CI=1.574-5.817 for recessive model), while DROSHA rs10719 and rs6877842 showed associations in Asian and laryngeal cancer subgroups.

Traits studied:Bladder cancerBreast cancerCancer susceptibilityColorectal cancerGastric cancerHead and neck cancerHepatocellular carcinomaLaryngeal cancerLung cancerOvarian cancerProstate cancerRenal cell carcinoma
Prognostic impact of microRNA-related gene polymorphisms on survival of patients with colorectal cancer
AssociationN=426Hyun-Chul Lee et al.(2010)· Journal of Cancer Research and Clinical Oncology

This study evaluated 40 SNPs in microRNA-related genes for associations with colorectal cancer prognosis in 426 Korean patients. In univariate analysis, mir492 C>G (rs2289030) was significantly associated with progression-free survival (PFS 70.8% for C/C vs 62.6% for C/G vs 60.3% for G/G, P=0.0426), but no associations remained significant in multivariate analysis. The authors concluded that none of the 40 miRNA-related gene polymorphisms tested were independent prognostic markers for surgically resected colorectal cancer.

Traits studied:Colorectal cancer prognosisOverall survivalProgression-free survival

About DGCR8

This gene encodes a subunit of the microprocessor complex which mediates the biogenesis of microRNAs from the primary microRNA transcript. The encoded protein is a double-stranded RNA binding protein that functions as the non-catalytic subunit of the microprocessor complex. This protein is required for binding the double-stranded RNA substrate and facilitates cleavage of the RNA by the ribonuclease III protein, Drosha. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Jun 2010]

View all DGCR8 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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