rs16890979

This is a variant in the SLC2A9 gene that changes a valine to an isoleucine.

GWAS Catalog Trait Associations (3)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

urate measurement

Allele T
OR 0.34
p 7.0e-168
N 11,847
Large GWAS
multi-ancestry
Allele T
OR 0.25
p 1.0e-29
N 15,282
Large GWAS
European

uric acid measurement

Allele A
OR 16.01
p 3.0e-18
N 1,109
Large GWAS
South Asian

ClinVar annotation

Benign★★★
6 submitters2 publications

Hypouricemia, renal, 2

View on ClinVar →

Research that mentions this SNP (3)

NPT1/SLC17A1 Is a Renal Urate Exporter in Humans and Its Common Gain‐of‐Function Variant Decreases the Risk of Renal Underexcretion Gout
AssociationN=3,103Toshinori Chiba et al.(2015)· Arthritis &amp; Rheumatology

This replication study analyzed 2255 variants in LD with GWAS-identified gout/serum urate susceptibility loci in 1255 Han Chinese gout patients and 1848 controls. Twenty-three variants (41%) showed nominal association (p<0.05), with the strongest signal at ABCG2 rs1481012 (p=8.96×10⁻¹¹, OR=1.890). Previous gout-associated loci including ABCG2, SLC2A9, GCKR, ALDH2, and CNIH2 were replicated, while cumulative genetic risk scores showed that individuals with ≥8 risk alleles had significantly increased gout risk (OR=16.361 for ≥12 alleles).

Traits studied:GoutSerum urate concentrations
Association between gout and polymorphisms in GCKR in male Han Chinese
AssociationN=3,103Jing Wang et al.(2012)· Human Genetics

This replication study examined 2,255 variants in linkage disequilibrium with GWAS-identified gout/urate susceptibility loci in 1,255 Han Chinese gout patients and 1,848 controls. Twenty-three variants (41% of 56 LD-pruned variants) showed nominal association with gout (p < 0.05), with the strongest signals at ABCG2 (rs1481012, OR=1.890, p=8.96×10⁻¹¹) and SLC2A9 (rs11722228, OR=1.619, p=2.40×10⁻⁶). Cumulative genetic risk score analysis demonstrated increasing gout risk with growing numbers of risk alleles (OR=16.361 for ≥12 alleles vs ≤5 reference).

Traits studied:GoutSerum urate levels
Association of a common nonsynonymous variant in GLUT9 with serum uric acid levels in old order amish
AssociationN=868Patrick F. McArdle et al.(2008)· Arthritis &amp; Rheumatism

A genome-wide association study of 868 Old Order Amish identified the Val253Ile variant (rs16890979) in GLUT9 as a determinant of serum uric acid levels (p = 1.43×10⁻¹¹, β = -0.47 mg/dL per minor allele). The variant explains 33% of uric acid variation and was validated to be associated with gout in the Framingham Heart Study (p = 0.004), suggesting GLUT9's role in uric acid homeostasis.

Traits studied:GoutSerum uric acid levels

About SLC2A9

This gene encodes a member of the SLC2A facilitative glucose transporter family. Members of this family play a significant role in maintaining glucose homeostasis. The encoded protein may play a role in the development and survival of chondrocytes in cartilage matrices. Two transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]

View all SLC2A9 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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