rs16890979
This is a variant in the SLC2A9 gene that changes a valine to an isoleucine.
▶GWAS Catalog Trait Associations (3)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
GWAS Catalog Trait Associations (3)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
urate measurement
gout
uric acid measurement
▶ClinVar annotation
▶Research that mentions this SNP (3)
▶NPT1/SLC17A1 Is a Renal Urate Exporter in Humans and Its Common Gain‐of‐Function Variant Decreases the Risk of Renal Underexcretion GoutAssociationN=3,103Toshinori Chiba et al.(2015)· Arthritis & Rheumatology
This replication study analyzed 2255 variants in LD with GWAS-identified gout/serum urate susceptibility loci in 1255 Han Chinese gout patients and 1848 controls. Twenty-three variants (41%) showed nominal association (p<0.05), with the strongest signal at ABCG2 rs1481012 (p=8.96×10⁻¹¹, OR=1.890). Previous gout-associated loci including ABCG2, SLC2A9, GCKR, ALDH2, and CNIH2 were replicated, while cumulative genetic risk scores showed that individuals with ≥8 risk alleles had significantly increased gout risk (OR=16.361 for ≥12 alleles).
▶Association between gout and polymorphisms in GCKR in male Han ChineseAssociationN=3,103Jing Wang et al.(2012)· Human Genetics
This replication study examined 2,255 variants in linkage disequilibrium with GWAS-identified gout/urate susceptibility loci in 1,255 Han Chinese gout patients and 1,848 controls. Twenty-three variants (41% of 56 LD-pruned variants) showed nominal association with gout (p < 0.05), with the strongest signals at ABCG2 (rs1481012, OR=1.890, p=8.96×10⁻¹¹) and SLC2A9 (rs11722228, OR=1.619, p=2.40×10⁻⁶). Cumulative genetic risk score analysis demonstrated increasing gout risk with growing numbers of risk alleles (OR=16.361 for ≥12 alleles vs ≤5 reference).
▶Association of a common nonsynonymous variant in GLUT9 with serum uric acid levels in old order amishAssociationN=868Patrick F. McArdle et al.(2008)· Arthritis & Rheumatism
A genome-wide association study of 868 Old Order Amish identified the Val253Ile variant (rs16890979) in GLUT9 as a determinant of serum uric acid levels (p = 1.43×10⁻¹¹, β = -0.47 mg/dL per minor allele). The variant explains 33% of uric acid variation and was validated to be associated with gout in the Framingham Heart Study (p = 0.004), suggesting GLUT9's role in uric acid homeostasis.
About SLC2A9
This gene encodes a member of the SLC2A facilitative glucose transporter family. Members of this family play a significant role in maintaining glucose homeostasis. The encoded protein may play a role in the development and survival of chondrocytes in cartilage matrices. Two transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]
View all SLC2A9 variants →Gene information from NCBI Gene. Variant classifications from ClinVar.
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