rs1724425

This is a intron variant variant in the LINC02210-CRHR1 gene.

GWAS Catalog Trait Associations (2)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

intelligence

Allele T
OR 6.53
p 7.0e-11
N 300,486
Large GWAS
European
Allele T
OR 0.02
p 3.0e-10
N 254,641
Large GWAS
European

Research that mentions this SNP (2)

Replication of MAPT and SNCA, but not PARK16‐18, as susceptibility genes for Parkinson's disease
AssociationN=2,606Ignacio F. Mata et al.(2011)· Movement Disorders

This replication study of 1,445 Parkinson's disease patients and 1,161 controls from Northern Spain confirms MAPT (rs1800547, p=3.1×10⁻⁴, OR=0.79) and SNCA (rs356219, p=5.5×10⁻⁴, OR=1.23) as PD susceptibility genes, but fails to replicate PARK16, PARK17, and PARK18 loci (p values 0.09-0.88). The findings suggest that PARK16-18 may harbor population-specific effects or require larger sample sizes for detection in European-derived populations.

Traits studied:Parkinson's disease
Genomewide association study for susceptibility genes contributing to familial Parkinson disease
AssociationN=1,724Nathan Pankratz et al.(2009)· Human Genetics

First genome-wide association study (GWAS) of familial Parkinson disease in 857 cases and 867 controls identified association with SNPs in GAK/DGKQ (p=3.4×10⁻⁶, OR=1.69), SNCA (p=5.5×10⁻⁵, OR=1.35), and MAPT (p=2.0×10⁻⁵, OR=0.56). Meta-analysis with Fung et al. strengthened evidence for GAK/DGKQ (p=2.5×10⁻⁷) and MAPT regions, confirming previously implicated genes and nominating new susceptibility loci for PD.

Traits studied:Parkinson diseasefamilial Parkinson disease

About LINC02210-CRHR1

This locus represents naturally occurring readthrough transcription between neighboring genes CRHR1-IT1, CRHR1 intronic transcript 1 (Gene ID: 147081) and CRHR1, corticotropin releasing hormone receptor 1 (Gene ID: 1394) on chromosome 17. The readthrough transcript encodes a protein that shares sequence identity with the product of the CRHR1 gene. [provided by RefSeq, Dec 2016]

View all LINC02210-CRHR1 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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