rs2075252

This is a variant in the LRP2 gene that changes a lysine to an glutamate.

GWAS Catalog Trait Associations (7)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

urate measurement

Cho C et al. Large-scale cross-ancestry genome-wide meta-analysis of serum urate. Nature Communications 15(1):3441 (2024)
Allele T
OR 0.04
p 1.0e-44
N 1,029,323
Meta-analysisLarge GWAS
multi-ancestry
Allele T
OR 0.02
p 4.0e-39
N 394,642
Large GWAS
European

uric acid measurement

Sakaue S et al. A cross-population atlas of genetic associations for 220 human phenotypes. Nature Genetics 53(10):1415-1424 (2021)
Allele C
OR 0.03
p 2.0e-40
N 473,241
Large GWAS
multi-ancestry
Allele C
OR 0.03
p 4.0e-9
N 181,927
Large GWAS
East Asian

gout

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele T
OR 0.08
p 2.0e-29
N 437,979
Major Consortium StudyLarge GWAS
European

serum creatinine amount

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele T
OR 0.03
p 6.0e-23
N 421,411
Major Consortium StudyLarge GWAS
European

hematocrit

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele T
OR 0.02
p 3.0e-12
N 407,836
Major Consortium StudyLarge GWAS
European

hemoglobin measurement

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele T
OR 0.02
p 1.0e-11
N 407,887
Major Consortium StudyLarge GWAS
European

Proteinuria

Benonisdottir S et al. Sequence variants associating with urinary biomarkers. Human Molecular Genetics 28(7):1199-1211 (2019)
Allele T
OR 1.08
p 1.0e-11
N 145,547
Large GWAS
European

ClinVar annotation

Benign★★★
11 submitters2 publications

Donnai-Barrow syndrome; not specified

View on ClinVar →

About LRP2

The protein encoded by this gene, low density lipoprotein-related protein 2 (LRP2) or megalin, is a multi-ligand endocytic receptor that is expressed in many different tissues but primarily in absorptive epithilial tissues such as the kidney. This glycoprotein has a large amino-terminal extracellular domain, a single transmembrane domain, and a short carboxy-terminal cytoplasmic tail. The extracellular ligand-binding-domains bind diverse macromolecules including albumin, apolipoproteins B and E, and lipoprotein lipase. The LRP2 protein is critical for the reuptake of numerous ligands, including lipoproteins, sterols, vitamin-binding proteins, and hormones. This protein also has a role in cell-signaling; extracellular ligands include parathyroid horomones and the morphogen sonic hedgehog while cytosolic ligands include MAP kinase scaffold proteins and JNK interacting proteins. Recycling of this membrane receptor is regulated by phosphorylation of its cytoplasmic domain. Mutations in this gene cause Donnai-Barrow syndrome (DBS) and facio-oculoacoustico-renal syndrome (FOAR).[provided by RefSeq, Aug 2009]

View all LRP2 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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