rs2075710
This variant is located in the GPX4 gene.
▶GWAS Catalog Trait Associations (2)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
GWAS Catalog Trait Associations (2)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
alkaline phosphatase measurement
keratinocyte carcinoma
▶ClinVar annotation
▶Research that mentions this SNP (1)
▶Variation in selenoenzyme genes and prostate cancer risk and survivalAssociationN=2,575Milan S. Geybels et al.(2013)· The Prostate
This candidate gene study examined associations between 35 common SNPs in seven selenoenzyme genes (GPX1-4, SEP15, SEPP1, TXNRD1) and prostate cancer risk and prostate cancer-specific mortality (PCSM) in 1,309 cases and 1,266 controls of European ancestry. Only GPX1 rs3448 remained significantly associated with overall prostate cancer risk (OR=0.62, 95% CI 0.44-0.88), and several SNPs showed stage/grade-dependent associations. Associations with PCSM were found for GPX4 and TXNRD1 variants, but none retained significance after multiple comparison adjustment.
About GPX4
The protein encoded by this gene belongs to the glutathione peroxidase family, members of which catalyze the reduction of hydrogen peroxide, organic hydroperoxides and lipid hydroperoxides, and thereby protect cells against oxidative damage. Several isozymes of this gene family exist in vertebrates, which vary in cellular location and substrate specificity. This isozyme has a high preference for lipid hydroperoxides and protects cells against membrane lipid peroxidation and cell death. It is also required for normal sperm development; thus, it has been identified as a 'moonlighting' protein because of its ability to serve dual functions as a peroxidase, as well as a structural protein in mature spermatozoa. Mutations in this gene are associated with Sedaghatian type of spondylometaphyseal dysplasia (SMDS). This isozyme is also a selenoprotein, containing the rare amino acid selenocysteine (Sec) at its active site. Sec is encoded by the UGA codon, which normally signals translation termination. The 3' UTRs of selenoprotein mRNAs contain a conserved stem-loop structure, designated the Sec insertion sequence (SECIS) element, that is necessary for the recognition of UGA as a Sec codon, rather than as a stop signal. Transcript variants resulting from alternative splicing or use of alternate promoters have been described to encode isoforms with different subcellular localization. [provided by RefSeq, Dec 2018]
View all GPX4 variants →Gene information from NCBI Gene. Variant classifications from ClinVar.
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