rs2235544

This is a regulatory region variant variant in the DIO1 gene.

GWAS Catalog Trait Associations (5)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

thyroxine level

Allele A
OR 0.10
p 6.0e-197
N 191,449
Large GWAS
European
Taylor PN et al. Whole-genome sequence-based analysis of thyroid function. Nature Communications 6:5681 (2015)
Allele A
OR 0.15
p 5.0e-34
N 13,651
Large GWAS
European
Allele A
OR 0.10
p 5.0e-12
N 8,809
Large GWAS
European
Allele A
OR
β 0.026
p 4.0e-13
N 7,015
Large GWAS
East Asian

body height

Allele A
OR 0.01
p 1.0e-13
N 5,314,291
Large GWAS
European, Hispanic or Latin American, East Asian, African unspecified, South Asian

ClinVar annotation

Drug Response
1 submitter

Levothyroxine response

View on ClinVar →

Research that mentions this SNP (2)

Thyroid‐associated genetic polymorphisms in relation to breast cancer risk in the Malmö Diet and Cancer Study
AssociationN=4,058Jasmine Brandt et al.(2018)· International Journal of Cancer

This prospective nested case-control study examined 17 single nucleotide polymorphisms related to free thyroxine (fT4) and thyroid peroxidase antibody (TPO-Ab) levels in 865 breast cancer cases and 3,193 controls from the Malmö Diet and Cancer Study. The main findings identified fT4-related SNPs rs2235544 (DIO1 gene, OR for breast cancer risk in low fT4 women) and rs6485050, as well as TPO-Ab-related SNPs rs11675434, rs3094228, rs1033662, rs301806, and rs2071403 as potentially associated with breast cancer risk. The most promising association was rs2235544 (DIO1), where the C allele was associated with lower fT4 levels and increased breast cancer risk, particularly in women with low fT4 levels, suggesting a potential causal relationship.

Traits studied:Breast cancer riskFree thyroxine (fT4) levelsThyroid peroxidase antibodies (TPO-Ab)
The relationship of deiodinase 1 genotype and thyroid function to lifetime history of major depression in three independent populations
AssociationN=1,555Robert A. Philibert et al.(2011)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

This candidate gene study examined 12 SNPs from genome-wide association studies of thyroid function in 1,555 subjects from three independent cohorts, testing associations with major depression and thyroid hormones. The authors confirmed that the DIO1 variant rs11206244 (T allele) was associated with increased free thyroxine (FT4) levels in both ethnic groups (p<0.004 in White females). Notably, rs11206244 genotype was associated with lifetime major depression in White female subjects from high-risk cohorts (p<0.004), but not in African American subjects or White males. Current FT4 levels were not associated with lifetime depression, suggesting thyroid changes in depression are state-dependent rather than trait-dependent.

Traits studied:Free thyroxine (FT4)Major depressionThyroid functionThyroid stimulating hormone (TSH)

About DIO1

The protein encoded by this gene belongs to the iodothyronine deiodinase family. It catalyzes the activation, as well as the inactivation of thyroid hormone by outer and inner ring deiodination, respectively. The activation reaction involves the conversion of the prohormone thyroxine (3,5,3',5'-tetraiodothyronine, T4), secreted by the thyroid gland, to the bioactive thyroid hormone (3,5,3'-triiodothyronine, T3) by 5'-deiodination. This protein provides most of the circulating T3, which is essential for growth, differentiation and basal metabolism in vertebrates. This protein is a selenoprotein, containing the rare amino acid selenocysteine (Sec) at its active site. Sec is encoded by the UGA codon, which normally signals translation termination. The 3' UTRs of selenoprotein mRNAs contain a conserved stem-loop structure, designated the Sec insertion sequence (SECIS) element, that is necessary for the recognition of UGA as a Sec codon, rather than as a stop signal. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jun 2018]

View all DIO1 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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