rs2237895

This is a downstream gene variant variant in the KCNQ1 gene.

GWAS Catalog Trait Associations (5)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

type 2 diabetes mellitus

Allele C
OR 0.07
p 3.0e-54
N 1,114,458
Meta-analysisLarge GWAS
European
Allele C
OR 1.12
p 6.0e-52
N 898,130
Large GWAS
European
Allele C
OR 1.25
p 4.0e-9
N 14,026
Large GWAS
East Asian
Allele C
OR 1.29
p 1.0e-9
N 1,889
Large GWAS
East Asian

hemoglobin A1 measurement

Sakaue S et al. A cross-population atlas of genetic associations for 220 human phenotypes. Nature Genetics 53(10):1415-1424 (2021)
Allele C
OR 0.03
p 7.0e-52
N 415,403
Large GWAS
multi-ancestry

HbA1c measurement

Allele C
OR 0.02
p 6.0e-39
N 394,642
Large GWAS
European

alanine measurement

Zoodsma M et al. A genetic map of human metabolism across the allele frequency spectrum. Nature Genetics 57(10):2445-2455 (2025)
Allele C
OR 0.01
p 6.0e-12
N 450,015
Large GWAS
multi-ancestry

body mass index

Huang J et al. Genomics and phenomics of body mass index reveals a complex disease network. Nature Communications 13(1):7973 (2022)
Allele C
OR 0.01
p 3.0e-9
N 1,122,049
Large GWAS
European

Research that mentions this SNP (11)

COX2 and NOS3 gene polymorphisms in women with gestational diabetes
ReviewMaciej Tarnowski et al.(2017)· The Journal of Gene Medicine

This comprehensive review synthesizes literature on gestational diabetes mellitus (GDM), demonstrating its complex multifactorial etiology involving genetic factors (SNPs in GCKR, KCNQ1, MTNR1B, TCF7L2), epigenetic modifications (DNA methylation and microRNA expression), and alterations in microbial composition across multiple body sites. While certain SNP variants are associated with GDM phenotypes globally, genetic predisposition alone does not explain disease development; lifestyle factors can modify epigenetic signatures and microbiota composition to modulate risk. Evidence indicates genes, epigenetic alterations, and microbiota can transfer from mother to offspring with long-term health consequences.

Traits studied:Cardiovascular diseaseFetal macrosomiaGestational diabetes mellitusHyperglycemiaHyperlipidemiaHypoglycemiaImpaired insulin secretionInflammatory conditionsInsulin resistanceMetabolic syndromeObesityPreeclampsiaType 2 diabetes
Excess maternal transmission of variants in the THADA gene to offspring with type 2 diabetes
AssociationN=5,674Rashmi B. Prasad et al.(2016)· Diabetologia

Family-based study examining parent-of-origin effects (POE) on type 2 diabetes risk in 4,211 individuals from Botnia and 1,463 from the Hungarian Transdanubian Biobank. Three loci showed nominal POE, with the strongest signal at rs7578597 in THADA showing excess maternal transmission of the risk T allele to diabetic offspring (Botnia pPOE=0.01, HTB pPOE=0.045, combined pPOE=0.0006). Five CpG sites flanking rs7578597 showed differential methylation between diabetic and non-diabetic islets, supporting potential THADA imprinting. Meta-analysis confirmed association with type 2 diabetes (OR=1.24, 95% CI 1.12-1.36, p=1.96×10⁻⁵).

Traits studied:BMIBlood pressureGlucose toleranceHyperglycaemiaImpaired fasting glucose (IFG)Impaired glucose tolerance (IGT)Insulin secretionInsulin sensitivityLipidsType 2 diabetesWaist-to-hip circumference ratio
Relationship between melatonin receptor 1B (rs10830963 and rs1387153) with gestational diabetes mellitus: a case–control study and meta-analysis
Meta-analysisN=1,364Qiong Liu et al.(2016)· Archives of Gynecology and Obstetrics

A case-control study of 674 GDM patients and 690 controls combined with a meta-analysis found that the G allele of rs10830963 and T allele of rs1387153 in MTNR1B are significantly associated with increased risk of gestational diabetes mellitus (GDM). Meta-analysis of 6 studies showed rs10830963 G allele increased GDM risk in co-dominant model (OR 1.62, 95% CI 1.34-1.94) and rs1387153 T allele increased risk in co-dominant model (OR 1.53, 95% CI 1.26-1.86).

Traits studied:Gestational diabetes mellitusType 2 diabetes
Systematic identification of interaction effects between genome- and environment-wide associations in type 2 diabetes mellitus
AssociationN=3,000Chirag J. Patel et al.(2013)· Human Genetics

This systematic study screened 18 T2D-associated SNPs and 5 environmental factors (trans-β-carotene, cis-β-carotene, γ-tocopherol, heptachlor epoxide, PCB170) for gene-environment interactions using NHANES data (1999-2000, 2001-2002). The strongest interaction was between rs13266634 (SLC30A8) and trans-β-carotene: in subjects with low trans-β-carotene levels, the per-risk-allele OR was 1.8 (95% CI 1.3-2.6), 40% higher than the marginal effect, and this interaction withstood Bonferroni correction (p = 0.006, FDR 1.5%). Four interactions total achieved FDR < 20%, suggesting that nutrient levels modify genetic risk for T2D.

Traits studied:Type 2 diabetes mellitus
Identification of CpG-SNPs associated with type 2 diabetes and differential DNA methylation in human pancreatic islets
AssociationN=84Dayeh TA et al.(2013)· Diabetologia

Of 40 SNPs previously associated with type 2 diabetes, 19 (48%) introduce or remove CpG sites. In 84 human pancreatic islet donors, all 16 analyzed CpG-SNPs showed statistically significant differential DNA methylation (p≤2.3×10⁻⁵). Several CpG-SNPs including rs391300 (SRR), rs5945326 (DUSP9), rs11708067 (ADCY5), rs5015480 (HHEX), rs13266634 (SLC30A8), rs1801214 (WFS1), rs564398 (CDKN2A), and rs2237895 (KCNQ1) were associated with differential gene expression, alternative splicing, or hormone secretion, suggesting DNA methylation-mediated mechanisms linking genetic variants to type 2 diabetes pathogenesis.

Traits studied:Glucagon secretionInsulin contentInsulin secretionType 2 diabetes
KCNQ1 SNPS and susceptibility to diabetic nephropathy in East Asians with type 2 diabetes
AssociationN=752Lim XL et al.(2012)· Diabetologia

This study investigated three KCNQ1 SNPs (rs2237895, rs2237897, rs2283228) for association with diabetic nephropathy in 752 Chinese type 2 diabetic patients. rs2283228 showed significant association with macroalbuminuria (p<0.001, OR 6.00, 95% CI 2.68-13.41 under recessive model) and log albumin/creatinine ratio (p=0.004). Meta-analysis combining Chinese and Japanese populations confirmed both rs2283228 and rs2237897 were significantly associated with macroalbuminuria, supporting KCNQ1 as a susceptibility locus for diabetic nephropathy in East Asians.

Traits studied:AlbuminuriaDiabetic nephropathyMacroalbuminuriaMicroalbuminuriaType 2 diabetes
Association between KCNQ1 genetic variants and obesity in Chinese patients with type 2 diabetes
AssociationN=13,273Yu W. et al.(2012)· Diabetologia

This case-control association study examined KCNQ1 genetic variants (rs2237892 and rs2237895) in Chinese patients with type 2 diabetes to determine their association with obesity. In diabetic patients from Hong Kong and meta-analysis across Shanghai and Hong Kong cohorts, rs2237892 was associated with lower BMI (β = -0.0048 per C allele for log10BMI, p = 2.20×10⁻⁵) and reduced risk of overweight/obesity (OR = 0.890, p = 0.001). rs2237895 showed similar results with decreased BMI (β = -0.0042, p = 4.30×10⁻⁵). No associations were detected in controls.

Traits studied:Body Mass Index (BMI)ObesityOverweightType 2 diabetesWaist circumference
The rs10830963 variant of melatonin receptor MTNR1B is associated with increased risk for gestational diabetes mellitus in a Greek population
AssociationN=1,025Margarita Vlassi et al.(2012)· Hormones

This case-control study investigated 25 T2DM-associated SNPs in a multi-ethnic Hawaiian cohort (291 GDM cases, 734 controls) and found ethnicity-specific associations with gestational diabetes. Key findings in Filipinos included rs1113132 (EXT2, OR=1.52, p=0.028), rs1111875 (HHEX, OR=1.5, p=0.047), rs2237892 (KCNQ1, OR=0.49, p<0.001), rs10830963 (MTNR1B, OR=0.63, p=0.025), and rs13266634 (SLC30A8, OR=0.58, p=0.011). In Japanese women, rs4402960 (IGFBP2, OR=0.5, p=0.031) and rs2237892 (KCNQ1, OR=0.5, p=0.03) were significant. Pacific Islanders showed associations with rs10830963 (MTNR1B, OR=0.52, p=0.037) and rs13266634 (SLC30A8, OR=2.43, p=0.03). No SNPs showed consistent associations across all three ethnic groups.

Traits studied:Gestational diabetes mellitus (GDM)Type 2 diabetes mellitus (T2DM)
Type 2 diabetes risk alleles near ADCY5, CDKAL1 and HHEX-IDE are associated with reduced birthweight
AssociationN=4,213Andersson EA et al.(2010)· Diabetologia

This association study of 4,213 Danish individuals examined 25 type 2 diabetes risk variants and their association with birthweight. The study found that type 2 diabetes risk alleles near ADCY5 (rs11708067, β = -33 g, p = 0.004), CDKAL1 (rs7756992, β = -22 g, p = 0.04), and HHEX-IDE (rs1111875, β = -16 g in meta-analysis, p = 8×10⁻⁵, n = 25,164) were associated with reduced birthweight, supporting the fetal insulin hypothesis. Meta-analyses confirmed these associations and showed no strong general effect on birthweight from the 25 common type 2 diabetes risk alleles combined.

Traits studied:Birth lengthBirthweightPonderal indexType 2 diabetes
Variants in KCNQ1 are associated with susceptibility to type 2 diabetes in the population of mainland China
AssociationN=3,953Liu Y. et al.(2009)· Diabetologia

This case-control association study in mainland China (1,912 type 2 diabetes cases, 2,041 controls) examined three KCNQ1 variants previously identified by genome-wide association studies. All three variants (rs2237892, rs2237895, rs2237897) showed significant association with type 2 diabetes risk: rs2237892 (OR 1.23, p=1.1×10⁻⁴), rs2237895 (OR 1.23, p=7.8×10⁻⁵), and rs2237897 (OR 1.28, p=2.0×10⁻⁶). These variants were also associated with BMI, waist measurements, and glycemic traits, confirming previous findings in Asian and European populations.

Traits studied:Body mass index (BMI)Fasting plasma glucoseHbA1c levelsType 2 diabetesWaist measurement
Variations in KCNQ1 are associated with type 2 diabetes and beta cell function in a Chinese population
AssociationN=3,503Hu C. et al.(2009)· Diabetologia

This case-control study validates the association between KCNQ1 variants and type 2 diabetes in a Chinese population of 3,503 individuals. All four tested SNPs (rs2074196, rs2237892, rs2237895, rs2237897) were significantly associated with type 2 diabetes, with rs2237892 showing the strongest association (OR 1.532, 95% CI 1.381-1.698, p=5.0×10^-16). The variants appear to influence disease susceptibility through effects on pancreatic beta cell function, as evidenced by associations with insulin secretion measures.

Traits studied:Acute C-peptide responseAcute insulin responseBeta cell functionFirst-phase insulin secretionSecond-phase insulin secretionType 2 diabetes

About KCNQ1

This gene encodes a voltage-gated potassium channel required for repolarization phase of the cardiac action potential. This protein can form heteromultimers with two other potassium channel proteins, KCNE1 and KCNE3. Mutations in this gene are associated with hereditary long QT syndrome 1 (also known as Romano-Ward syndrome), Jervell and Lange-Nielsen syndrome, and familial atrial fibrillation. This gene exhibits tissue-specific imprinting, with preferential expression from the maternal allele in some tissues, and biallelic expression in others. This gene is located in a region of chromosome 11 amongst other imprinted genes that are associated with Beckwith-Wiedemann syndrome (BWS), and itself has been shown to be disrupted by chromosomal rearrangements in patients with BWS. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Aug 2011]

View all KCNQ1 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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