rs2312147

This variant is located in the VRK2 gene.

GWAS Catalog Trait Associations (1)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

feeling miserable measurement

Nagel M et al. Item-level analyses reveal genetic heterogeneity in neuroticism. Nature Communications 9(1):905 (2018)
Allele T
OR 7.34
p 2.0e-13
N 376,097
Large GWAS
European

Research that mentions this SNP (3)

Evaluation of the relationship between VRK2, rs4380187 polymorphisms, and genetic susceptibility to schizophrenia in the Chinese Han population
AssociationN=986Xianglai Liu et al.(2021)· The Journal of Gene Medicine

A case-control study in 493 Chinese Han schizophrenia patients and 493 controls found that the C allele of rs4380187 (near ZNF804A) was significantly associated with decreased schizophrenia risk (OR=0.79, 95% CI: 0.66-0.94, p=0.008). The AA genotype showed significantly lower frequency in cases (OR=0.62, p=0.009), and associations were stronger in males (OR=0.64-0.68, p=0.002-0.003) and individuals aged ≥36 years.

Traits studied:schizophrenia
Neural effects of the CSMD1 genome‐wide associated schizophrenia risk variant rs10503253
ReviewEmma J. Rose et al.(2013)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

A comprehensive review of the genetics and epigenetics of schizophrenia, covering candidate gene associations, genome-wide association studies (GWAS), gene expression studies, and epigenetic mechanisms. The review highlights major GWAS findings including associations with CSMD1 (rs10503253), CACNA1C (rs4765905), SLC30A3 (rs11126936, rs11126929), VRK2 (rs2312147), MPC2 (rs10489202), miR-137 (rs1625579), and MKL1 (rs6001946), while discussing the complex polygenic architecture of the disorder with heritability estimated at 81-85%.

Traits studied:Schizophrenia
Association analysis of ANK3 gene variants in nordic bipolar disorder and schizophrenia case–control samples
ReviewMartin Tesli et al.(2011)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

This review comprehensively summarizes the latest genetic studies on schizophrenia, including family studies (heritability ~80%), genome-wide association studies, epigenetic mechanisms, candidate gene investigations, and next-generation sequencing findings. Key GWAS findings identified 108 schizophrenia-associated loci including variants in MIR137 (rs1625579), TCF4 (rs12966547), CSMD1 (rs10503253), CACNA1C (rs4765905), ANK3 (rs10761482), and MHC region variants, with evidence for polygenetic inheritance involving both common SNPs and rare copy number variations.

Traits studied:Auditory steady-state responseAutism spectrum disorderBipolar disorderCognitive impairmentMental retardationSchizophreniaSchizophrenia endophenotypesSchizophrenia with general psychopathologic symptomsSchizophrenia with negative symptomsSchizophrenia with positive symptomsSensory processing disorderTreatment-resistant schizophreniaUnipolar depression

About VRK2

This gene encodes a member of the vaccinia-related kinase (VRK) family of serine/threonine protein kinases. The encoded protein acts as an effector of signaling pathways that regulate apoptosis and tumor cell growth. Variants in this gene have been associated with schizophrenia. Alternative splicing results in multiple transcript variants that differ in their subcellular localization and biological activity. [provided by RefSeq, Jan 2014]

View all VRK2 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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