rs2664593

This is a intron variant variant in the ALOX15 gene.

Research that mentions this SNP (2)

Genetic variation in the lipoxygenase pathway and risk of colorectal neoplasia
AssociationN=5,618Sarah E. Kleinstein et al.(2013)· Genes, Chromosomes and Cancer

This case-control study investigated associations between genetic polymorphisms in lipoxygenase pathway genes (ALOX5, FLAP, ALOX12, ALOX15) and colorectal cancer risk across three US populations (colon cancer: 1424 cases/1780 controls; rectal cancer: 583 cases/775 controls; adenoma: 485 cases/578 controls). The ALOX5 VNTR variant was associated with significantly lower rectal cancer risk (OR>5/≥5 vs 5/5 = 0.42, p=0.01). Four SNPs (rs17239025, rs2073438, rs4796535, rs2619112) were associated with rectal cancer risk at p≤0.05. Genetic variability in FLAP and ALOX15 modified the protective effect of NSAID use against colorectal neoplasia, particularly for rectal cancer.

Traits studied:Colon cancerColorectal adenomaColorectal cancerColorectal neoplasiaRectal cancer
Genetic Variation in Candidate Osteoporosis Genes, Bone Mineral Density, and Fracture Risk: The Study of Osteoporotic Fractures
AssociationN=6,752Gregory J. Tranah et al.(2008)· Calcified Tissue International

A candidate gene association study of 6,752 women from the Study of Osteoporotic Fractures examined 31 polymorphisms in 18 candidate osteoporosis genes for associations with fracture risk and bone mineral density. ALOX15_G48924T (rs7220870) T/T genotype was associated with 33% higher hip fracture risk (HR=1.33, 95% CI 1.00-1.77); PRL_T228C (rs7739889) C alleles reduced nonvertebral fracture risk by ~20%; BMP2_A125611G (rs235764) G/G showed 51% higher vertebral fracture risk (OR=1.51, 95% CI 1.03-2.23); and MMP2_C595T (rs243865) T allele carriers had reduced vertebral fracture risk. No significant associations were found with total hip BMD.

Traits studied:Bone mineral densityHip fractureNonvertebral/nonhip fractureOsteoporosisVertebral fracture

About ALOX15

This gene encodes a member of the lipoxygenase family of proteins. The encoded enzyme acts on various polyunsaturated fatty acid substrates to generate various bioactive lipid mediators such as eicosanoids, hepoxilins, lipoxins, and other molecules. The encoded enzyme and its reaction products have been shown to regulate inflammation and immunity. Multiple pseudogenes of this gene have been identified in the human genome. [provided by RefSeq, Aug 2017]

View all ALOX15 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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