rs45631563

This is a intron variant variant in the FGFR2 gene.

GWAS Catalog Trait Associations (3)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

prostate specific antigen amount

Allele A
OR 0.08
p 9.0e-49
N 392,522
Large GWAS
multi-ancestry
Kachuri L et al. Genetically adjusted PSA levels for prostate cancer screening. Nature Medicine 29(6):1412-1423 (2023)
Allele A
OR 0.09
p 8.0e-23
N 95,768
Large GWAS
multi-ancestry

breast carcinoma

Michailidou K et al. Association analysis identifies 65 new breast cancer risk loci. Nature 551(7678):92-94 (2017)
Allele A
OR 1.23
p 7.0e-37
N 139,274
Large GWAS
multi-ancestry
Allele A
OR 1.21
p 1.0e-35
N 277,932
Large GWAS
multi-ancestry

cancer

Allele A
OR
p 2.0e-9
N 475,312
Large GWAS
European

ClinVar annotation

Benign☆☆☆
1 submitter1 publication

FGFR2-related craniosynostosis

View on ClinVar →

About FGFR2

The protein encoded by this gene is a member of the fibroblast growth factor receptor family, where amino acid sequence is highly conserved between members and throughout evolution. FGFR family members differ from one another in their ligand affinities and tissue distribution. A full-length representative protein consists of an extracellular region, composed of three immunoglobulin-like domains, a single hydrophobic membrane-spanning segment and a cytoplasmic tyrosine kinase domain. The extracellular portion of the protein interacts with fibroblast growth factors, setting in motion a cascade of downstream signals, ultimately influencing mitogenesis and differentiation. This particular family member is a high-affinity receptor for acidic, basic and/or keratinocyte growth factor, depending on the isoform. Mutations in this gene are associated with Crouzon syndrome, Pfeiffer syndrome, Craniosynostosis, Apert syndrome, Jackson-Weiss syndrome, Beare-Stevenson cutis gyrata syndrome, Saethre-Chotzen syndrome, and syndromic craniosynostosis. Multiple alternatively spliced transcript variants encoding different isoforms have been noted for this gene. [provided by RefSeq, Jan 2009]

View all FGFR2 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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