rs7270101

This is a intron variant variant in the ITPA gene.

GWAS Catalog Trait Associations (1)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

chronic hepatitis C virus infection

Allele C
OR
p 9.0e-76
N 1,286
Large GWAS
multi-ancestry

ClinVar annotation

Drug Response★★★★
5 submitters10 publications

Developmental and epileptic encephalopathy, 35 (DEE35); Inosine triphosphatase deficiency; peginterferon alfa-2b and ribavirin response - Toxicity

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Research that mentions this SNP (4)

ITPA gene polymorphisms significantly affect hemoglobin decline and treatment outcomes in patients coinfected with HIV and HCV
AssociationN=121Anu Osinusi et al.(2012)· Journal of Medical Virology

This study examined ITPA gene polymorphisms (rs1127354 and rs7270101) in 121 patients with HIV/HCV coinfection (n=63) and HCV monoinfection (n=58) treated with pegIFN/RBV. ITPA deficiency was found protective against hemoglobin reduction >3 g/dl (P=0.020 at week 4 in coinfected patients) and was associated with rapid virologic response at week 4 (P=0.017) in HIV/HCV coinfected patients, but did not improve sustained virologic response.

Traits studied:Hemoglobin declineRBV-induced hemolytic anemiaTreatment response to pegIFN/RBV in HCV
Influence of ITPA polymorphisms on decreases of hemoglobin during treatment with pegylated interferon, ribavirin, and telaprevir
AssociationN=61Fumitaka Suzuki et al.(2011)· Hepatology

This study examined ITPA gene polymorphisms (rs1127354) and their influence on hemoglobin decreases during triple therapy with pegylated interferon, ribavirin, and telaprevir in 61 Japanese patients with hepatitis C virus genotype 1. Patients with the CC genotype at rs1127354 experienced significantly greater hemoglobin reductions (Δ-3.5 ± 1.1 g/dL at week 4, P=0.001) compared to CA/AA genotypes, required more RBV dose reductions during the first 12 weeks (52% vs 65% of target dose, P=0.039), and had higher risk for severe anemia (OR=36.8 for hemoglobin <11 g/dL). SVR rates were comparable between genotypes (71% vs 67%, P=0.736), demonstrating that with careful monitoring and dose adjustment, effective HCV treatment can be achieved despite genetic predisposition to RBV-induced anemia.

Traits studied:Hemoglobin decrease during antiviral therapyHepatitis C virus response to triple therapyRibavirin-induced anemia
Inosine triphosphatase genetic variants are protective against anemia during antiviral therapy for HCV2/3 but do not decrease dose reductions of RBV or increase SVR
AssociationN=238Alexander J. Thompson et al.(2011)· Hepatology

Two functional ITPA gene variants (rs1127354 and rs7270101) were strongly protective against ribavirin-induced hemolytic anemia in 238 HCV genotype 2/3 patients treated with pegylated interferon and ribavirin (P=10^-6 and P=10^-7 respectively; combined P=10^-11). Despite protection from anemia, ITPA variants did not decrease the need for ribavirin dose reduction or improve sustained virological response.

Traits studied:Hepatitis C virus infectionRibavirin-induced hemolytic anemiaSustained virological response
Limited use of interleukin 28B in the setting of response-guided treatment with detailed on-treatment virological monitoring
ReviewAlessandra Mangia et al.(2011)· Hepatology

This is a special issue of the Italian medical journal BeAdfiles (September 2012) dedicated to genetic conditioning in HIV and hepatitis virus infections. It reviews the major genetic polymorphisms that influence disease progression, treatment response, and drug toxicity in HIV and chronic hepatitis B and C infections, with particular emphasis on IL28B polymorphisms (rs809917 and others) predicting HCV treatment response to interferon-alpha and ribavirin therapy, and ITPA gene variants protecting against ribavirin-induced anemia. The issue also covers pharmacogenetic markers (CYP2B6, ABCB1, HLA-B*5701) and their clinical applications in antiretroviral therapy.

Traits studied:AIDS progressionAntiretroviral therapy toxicityChronic hepatitis C sustained virological responseCreutzfeldt-Jakob diseaseDyslipidemiaEfavirenz side effectsHIV infection and progressionHepatitis B virus infectionHepatitis C genotype 1 response to interferonHepatitis C virus infectionHyperbilirubinemiaLeprosyLipodystrophyNeisseria meningitidis infectionNorovirus diarrheaPlasmodium falciparum malariaPlasmodium vivax malariaRenal impairmentRibavirin-induced anemiaTreatment response to interferon and ribavirinTuberculosis

About ITPA

This gene encodes an inosine triphosphate pyrophosphohydrolase. The encoded protein hydrolyzes inosine triphosphate and deoxyinosine triphosphate to the monophosphate nucleotide and diphosphate. This protein, which is a member of the HAM1 NTPase protein family, is found in the cytoplasm and acts as a homodimer. Defects in the encoded protein can result in inosine triphosphate pyrophosphorylase deficiency which causes an accumulation of ITP in red blood cells. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Jun 2012]

View all ITPA variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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