rs763780

This is a variant in the IL17F gene that changes a histidine to an arginine.

GWAS Catalog Trait Associations (2)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

overall survival, pancreatic carcinoma

Allele G
OR 3.30
p 3.0e-8
N 868
Small GWAS
European

response to gemcitabine

Innocenti F et al. A genome-wide association study of overall survival in pancreatic cancer patients treated with gemcitabine in CALGB 80303. Clinical Cancer Research : an Official Journal of the American Association for Cancer Research 18(2):577-84 (2012)
Allele G
OR 3.30
p 3.0e-8
N 294
Small GWAS
European

ClinVar annotation

Benign★★★
4 submitters2 publications

Candidiasis, familial, 6 (CANDF6)

View on ClinVar →

Research that mentions this SNP (9)

Association between the IL1R2 rs2072472 polymorphism and high‐altitude pulmonary edema risk
AssociationN=568Tianbo Jin et al.(2019)· Molecular Genetics &amp; Genomic Medicine

A case-control study of 265 HAPE cases and 303 controls in a Chinese Han population investigated associations between 11 SNPs in IL1R1 and IL1R2 genes and high-altitude pulmonary edema (HAPE) risk. The rs2072472 variant in IL1R2 was significantly associated with decreased HAPE risk (OR = 0.73, 95% CI = 0.55-0.97, p = 0.033 in allele model; OR = 0.66, 95% CI = 0.49-0.90, p = 0.009 in log-additive model adjusted for age and gender), suggesting IL1R2 polymorphisms may play a protective role in HAPE susceptibility.

Traits studied:High-altitude pulmonary edema (HAPE)
Interleukin‐17 and Toll‐like Receptor 10 genetic polymorphisms and susceptibility to large joint osteoarthritis
AssociationN=96Goran Vrgoc et al.(2018)· Journal of Orthopaedic Research

A case-control study of 35 keratoconus patients and 61 controls from Brazil investigating interleukin 17 polymorphisms. The IL17F T7488C (rs763780) TT genotype was significantly associated with keratoconus risk (P = 0.04; OR = 3.01; 95% CI 1.11-8.14), while IL17A G197A (rs2275913) showed no significant association. The findings suggest IL17F polymorphism may influence keratoconus pathogenesis.

Traits studied:Keratoconus
Interleukin-17 and leptin genes polymorphisms and their levels in relation to recurrent pregnancy loss in Egyptian females
AssociationN=240Haidy E. Zidan et al.(2015)· Immunogenetics

A case-control study of 120 Egyptian females with recurrent pregnancy loss (RPL) and 120 controls found that IL-17 F rs763780 CC genotype was associated with decreased RPL risk (OR=0.36, 95% CI=0.16-1.8, P=0.01), while IL-17 A rs2275913 AA genotype and leptin rs7799039 AA genotype were associated with increased RPL risk (OR=2.44, 95% CI=1.14-5.2, P=0.025 and OR=3.24, 95% CI=1.52-6.9, P=0.005, respectively). Serum IL-17 and leptin levels were significantly elevated in RPL patients compared to controls, with higher levels in obese versus lean RPL patients.

Traits studied:Recurrent pregnancy loss
Genetic variants in noncoding PIWI‐interacting RNA and colorectal cancer risk
AssociationN=280Haiyan Chu et al.(2015)· Cancer

This PhD thesis investigated pharmacogenetics of microRNAs and immune system genes in locally advanced rectal cancer (LARC) patients treated with neoadjuvant chemoradiotherapy. In 265 LARC patients, five SNPs were identified as predictive biomarkers of pathological response: DROSHA-rs10719 (OR=1.87, p=0.0274) and SMAD3-rs17228212 (OR=2.01, p=0.0049) were unfavorable, while SMAD3-rs744910 (OR=0.45, p=0.0153), SMAD3-rs745103 (OR=0.48, p=0.0471), and TRBP-rs6088619 (OR=0.39, p=0.0125) were protective. In 235 LARC patients, three prognostic biomarkers for 2-year disease-free survival were identified: IL17F-rs641701 (HR=3.23, p=0.003), IL17F-rs9463772 (HR=2.89, p=0.002), and STAT3-rs8069645 (HR=0.50, p=0.044).

Traits studied:Chemoradiotherapy responseDisease-free survivalLocally advanced rectal cancerOverall survivalPathological complete responseTumour regression grade
Association of Variants in IL2RA With Progression of Joint Destruction in Rheumatoid Arthritis
ReviewKnevel R. et al.(2013)· Arthritis &amp; Rheumatism

This systematic literature review examines interleukin and interleukin receptor gene polymorphisms associated with rheumatoid arthritis (RA) pathogenesis, diagnostics, and treatment. The paper summarizes polymorphisms in multiple IL genes (IL-1B rs16944, rs1143634; IL-6 rs1800795, rs1800796; IL-10 rs1800896; IL-23R rs11209026; IL-17A rs2275913 and others) across diverse populations, their associations with RA susceptibility and disease severity, and discusses current and future immunologic therapeutic targets including TNF inhibitors and IL-6 receptor antagonists.

Traits studied:ACPA (anti-citrullinated protein antibody) positivityDisease severityErosive joint damageRadiographic progressionRheumatoid arthritis
Genetic polymorphisms of interleukin 17A and interleukin 17F and their association with inflammatory bowel disease in a Chinese Han population
AssociationN=620Xiaofei Zhang et al.(2013)· Inflammation Research

Case-control study of 270 UC and 82 CD patients versus 268 controls in a Chinese Han population found that IL17F rs763780 mutant allele C was significantly associated with increased Crohn's disease risk (OR 1.18, 95% CI 1.41-3.04, P=0.033) and ileocolic phenotype. IL17A rs2275913 G-197A variant showed weak association with UC disease severity, and a rare IL17A haplotype (GGTT; rs2275913/rs8193037/rs8193038/rs3804513) was a risk factor for UC (OR 4.58, P=0.034).

Traits studied:Crohn's diseaseInflammatory bowel diseaseUlcerative colitis
Potentially functional polymorphisms in IL‐23 receptor and risk of esophageal cancer in a Chinese population
AssociationN=3,339Hongjun Chu et al.(2012)· International Journal of Cancer

A case-control study of 1,645 esophageal cancer cases and 1,694 controls in a Chinese population found that IL-23R rs6682925 T>C (adjusted OR=1.23, 95% CI 1.07-1.42) and rs1884444 T>G (adjusted OR=1.16, 95% CI 1.01-1.33) variant genotypes were significantly associated with increased esophageal cancer risk. The associations were independent of smoking and alcohol drinking status.

Traits studied:Esophageal cancer
Estrogen receptors alpha (rs2234693 and rs9340799), and beta (rs4986938 and rs1256049) genes polymorphism in prostate cancer: Evidence for association with risk and histopathological tumor characteristics in Iranian men
Meta-analysisN=69,809Mohammad Reza Safarinejad et al.(2012)· Molecular Carcinogenesis

A meta-analysis of 80 studies (69 publications) with 26,428 cancer cases and 43,381 controls evaluating the ESR1 PvuII rs2234693 T>C polymorphism and cancer susceptibility. Overall, the T allele showed modest decreased cancer risk (OR=0.95, 95% CI=0.91-0.99), with stronger associations for specific cancer types: prostate cancer (TT vs. CC: OR=0.79), leiomyoma (T vs. C: OR=0.82), and hepatocellular carcinoma (TT vs. CC: OR=0.45). The authors conclude that ESR1 PvuII polymorphism has minimal impact on overall cancer susceptibility.

Traits studied:Breast cancerCancer susceptibilityColorectal cancerEndometrial cancerHepatocellular carcinomaLeiomyomaMelanomaNon-small cell lung cancerProstate cancer
Confirmation of STAT4, IL2/IL21, and CTLA4 polymorphisms in rheumatoid arthritis
ReviewNina A. Daha et al.(2009)· Arthritis &amp; Rheumatism

This systematic literature review examines interleukin (IL) and interleukin receptor gene polymorphisms associated with rheumatoid arthritis (RA), covering studies from the past 10 years. The review discusses the pathogenesis of RA as a multifactorial autoimmune disease where genetic factors account for approximately 60% of disease risk. Multiple polymorphisms across IL-1, IL-2, IL-4, IL-6, IL-8, IL-10, IL-15, IL-17, IL-18, and IL-23R genes have been investigated in various populations, with inconsistent results across populations. The paper also reviews current and future therapeutic targets including anti-TNF, anti-IL-1, anti-IL-6, and anti-IL-17 treatments.

Traits studied:Rheumatoid arthritis

About IL17F

The protein encoded by this gene is a cytokine that shares sequence similarity with IL17. This cytokine is expressed by activated T cells, and has been shown to stimulate the production of several other cytokines, including IL6, IL8, and CSF2/GM_CSF. This cytokine is also found to inhibit the angiogenesis of endothelial cells and induce endothelial cells to produce IL2, TGFB1/TGFB, and monocyte chemoattractant protein-1. [provided by RefSeq, Jul 2008]

View all IL17F variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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