rs8192917

This is a protein-altering variant in the GZMB gene.

GWAS Catalog Trait Associations (5)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

granzyme b measurement

Sun BB et al. Genomic atlas of the human plasma proteome. Nature 558(7708):73-79 (2018)
Allele T
OR 1.01
p
N 3,301
Large GWAS
European

blood protein amount

Allele C
OR 0.52
p 5.0e-131
N 5,361
Large GWAS
European

Vitiligo

Allele C
OR 1.25
p 9.0e-16
N 40,258
Large GWAS
European
Jin Y et al. Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo. The New England Journal of Medicine 362(18):1686-97 (2010)
Allele C
OR 1.28
p 3.0e-8
N 4,021
Large GWAS
European

Research that mentions this SNP (3)

A genetic variant in granzyme B is associated with progression of joint destruction in rheumatoid arthritis
AssociationN=1,418Knevel R. et al.(2013)· Arthritis &amp; Rheumatism

This association study of 1,418 RA patients across 4 European cohorts identified rs8192916 (located in GZMB) as significantly associated with the rate of joint destruction in rheumatoid arthritis (relative rate 1.05 per year, P = 7.8 × 10⁻⁴). Expression QTL analysis demonstrated that the minor allele of rs8192916 was correlated with higher GZMB expression in whole blood (P = 2.27 × 10⁻⁵).

Traits studied:Joint destruction progressionRadiographic joint damageRheumatoid arthritis
Possible contribution of GSTP1 and other xenobiotic metabolizing genes to vitiligo susceptibility
AssociationN=200Mikhail M. Minashkin et al.(2013)· Archives of Dermatological Research

A candidate gene association study in 100 Russian vitiligo patients and 100 controls identified a strong novel association between GSTP1 rs1138272 (Ala114Val, OR=13.03, Bonferroni-adjusted P=0.0015) and vitiligo susceptibility. Cumulative analysis of multiple xenobiotic metabolizing genes showed that carrying higher numbers of risk alleles was associated with increased vitiligo risk (9-16 vs 3-8 alleles: OR=2.79, P=0.00063), supporting a polygenic model for vitiligo involving detoxification pathway genes.

Traits studied:Vitiligo
Genetic loci contributing to hemophagocytic lymphohistiocytosis do not confer susceptibility to systemic‐onset juvenile idiopathic arthritis
AssociationN=3,517Rachelle Donn et al.(2008)· Arthritis &amp; Rheumatism

This case-control association study investigated whether SNPs in genes involved in hemophagocytic lymphohistiocytosis (PRF1, GZMB, UNC13D, Rab27a) confer susceptibility to systemic-onset juvenile idiopathic arthritis. Testing 27 SNPs across these 4 genes in 133 UK Caucasian patients and 384 controls (expanded with ~3,000 additional WTCCC controls), the study found no significant associations between any SNP and systemic-onset JIA, either by single-point or haplotype analysis, concluding these genes do not contribute substantial risk to the disease.

Traits studied:Hemophagocytic lymphohistiocytosisMacrophage activation syndromeSystemic-onset juvenile idiopathic arthritis

About GZMB

This gene encodes a member of the granzyme subfamily of proteins, part of the peptidase S1 family of serine proteases. The encoded preproprotein is secreted by natural killer (NK) cells and cytotoxic T lymphocytes (CTLs) and proteolytically processed to generate the active protease, which induces target cell apoptosis. This protein also processes cytokines and degrades extracellular matrix proteins, and these roles are implicated in chronic inflammation and wound healing. Expression of this gene may be elevated in human patients with cardiac fibrosis. [provided by RefSeq, Sep 2016]

View all GZMB variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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