Trait
SNPs associated with Vitiligo
78 genetic variants across 38 genes have been associated with Vitiligo in published research. Key genes include ABR, ARID5B, ATXN2.
Associated variants78 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs2111485 | LOC105373724 | GWAS association (p=5.0e-15) | Major Consortium Study |
| rs28366353 | — | GWAS association (p=6.0e-23) | Major Consortium Study |
| rs9380143 | — | GWAS association (p=5.0e-18) | Major Consortium Study |
| rs540299830 | — | GWAS association (p=4.0e-14) | Major Consortium Study |
| rs1805007 | MC1R | GWAS association (p=2.0e-13) | Major Consortium Study |
| rs550546168 | SP3 | GWAS association (p=8.0e-13) | Major Consortium Study |
| rs139043011 | ABR | GWAS association (p=2.0e-12) | Major Consortium Study |
| rs12203592 | IRF4 | GWAS association (p=5.0e-54) | Major Consortium Study |
| rs1042602 | TYR | GWAS association (p=2.0e-19) | Major Consortium Study |
| rs6679677 | PHTF1 | GWAS association (p=2.0e-14) | Major Consortium Study |
| rs9271597 | — | GWAS association (p=3.0e-89) | Large GWAS |
| rs11966200 | SLC44A4 | GWAS association (p=1.0e-48) | Large GWAS |
| rs4268748 | DEF8 | GWAS association (p=3.0e-33) | Large GWAS |
| rs2017445 | IKZF4 | GWAS association (p=7.0e-31) | Large GWAS |
| rs229527 | C1QTNF6 | GWAS association (p=1.0e-30) | Large GWAS |
| rs13076312 | LPP | GWAS association (p=2.0e-30) | Large GWAS |
| rs12482904 | UBASH3A | GWAS association (p=6.0e-29) | Large GWAS |
| rs706779 | IL2RA | GWAS association (p=7.0e-27) | Large GWAS |
| rs117744081 | — | GWAS association (p=9.0e-26) | Large GWAS |
| rs11021232 | — | GWAS association (p=2.0e-23) | Large GWAS |
| rs10774624 | LINC02356 | GWAS association (p=6.0e-23) | Large GWAS |
| rs3823355 | HCG9 | GWAS association (p=9.0e-23) | Large GWAS |
| rs6059655 | RALY | GWAS association (p=1.0e-19) | Large GWAS |
| rs10200159 | PPP4R3B | GWAS association (p=4.0e-19) | Large GWAS |
| rs3806156 | BTNL2 | GWAS association (p=7.0e-19) | Large GWAS |
| rs34346645 | — | GWAS association (p=8.0e-19) | Large GWAS |
| rs2476601 | PTPN22 | GWAS association (p=1.0e-18) | Large GWAS |
| rs1393350 | TYR | GWAS association (p=2.0e-18) | Large GWAS |
| rs2247314 | RNASET2 | GWAS association (p=2.0e-18) | Large GWAS |
| rs4766578 | ATXN2 | GWAS association (p=4.0e-18) | Large GWAS |
| rs1043101 | — | GWAS association (p=5.0e-18) | Large GWAS |
| rs78037977 | — | GWAS association (p=7.0e-17) | Large GWAS |
| rs2236313 | RNASET2 | GWAS association (p=1.0e-16) | Large GWAS |
| rs8192917 | GZMB | GWAS association (p=9.0e-16) | Large GWAS |
| rs9611565 | — | GWAS association (p=3.0e-15) | Large GWAS |
| rs301807 | RERE | GWAS association (p=4.0e-15) | Large GWAS |
| rs148136154 | — | GWAS association (p=5.0e-15) | Large GWAS |
| rs4908760 | RERE | GWAS association (p=7.0e-15) | Large GWAS |
| rs72928038 | — | GWAS association (p=1.0e-14) | Large GWAS |
| rs4807000 | — | GWAS association (p=2.0e-14) | Large GWAS |
| rs2456973 | IKZF4 | GWAS association (p=3.0e-14) | Large GWAS |
| rs1635168 | — | GWAS association (p=9.0e-14) | Large GWAS |
| rs1126809 | TYR | GWAS association (p=1.0e-43) | Large GWAS |
| rs9926296 | FANCA | GWAS association (p=2.0e-13) | Large GWAS |
| rs4409785 | — | GWAS association (p=2.0e-13) | Large GWAS |
| rs2687812 | — | GWAS association (p=2.0e-13) | Large GWAS |
| rs12771452 | CASP7 | GWAS association (p=4.0e-12) | Large GWAS |
| rs10876864 | IKZF4 | GWAS association (p=8.0e-12) | Large GWAS |
| rs1464510 | LPP | GWAS association (p=1.0e-11) | Large GWAS |
| rs7758128 | TSBP1-AS1 | GWAS association (p=8.0e-11) | Large GWAS |
| rs231725 | — | GWAS association (p=1.0e-10) | Large GWAS |
| rs8083511 | TNFRSF11A | GWAS association (p=3.0e-10) | Large GWAS |
| rs59374417 | — | GWAS association (p=4.0e-10) | Large GWAS |
| rs4822024 | — | GWAS association (p=7.0e-10) | Large GWAS |
| rs73456411 | IL1RAPL1 | GWAS association (p=7.0e-10) | Large GWAS |
| rs11079035 | — | GWAS association (p=7.0e-10) | Large GWAS |
| rs5952553 | — | GWAS association (p=1.0e-09) | Large GWAS |
| rs16843742 | PTPRC | GWAS association (p=1.0e-09) | Large GWAS |
| rs11203203 | UBASH3A | GWAS association (p=1.0e-09) | Large GWAS |
| rs10768122 | SLC1A2 | GWAS association (p=2.0e-09) | Large GWAS |
| rs638893 | — | GWAS association (p=2.0e-09) | Large GWAS |
| rs2304206 | IRF3 | GWAS association (p=2.0e-09) | Large GWAS |
| rs4308124 | — | GWAS association (p=4.0e-09) | Large GWAS |
| rs41342147 | — | GWAS association (p=4.0e-09) | Large GWAS |
| rs35860234 | — | GWAS association (p=5.0e-09) | Large GWAS |
| rs71508903 | ARID5B | GWAS association (p=7.0e-09) | Large GWAS |
| rs6012953 | — | GWAS association (p=9.0e-09) | Large GWAS |
| rs10986311 | — | GWAS association (p=1.0e-08) | Large GWAS |
| rs16872571 | CLNK | GWAS association (p=2.0e-08) | Large GWAS |
| rs853308 | TG | GWAS association (p=2.0e-08) | Large GWAS |
| rs3757247 | BACH2 | GWAS association (p=3.0e-08) | Large GWAS |
| rs6583331 | — | GWAS association (p=3.0e-08) | Large GWAS |
| rs1031034 | — | GWAS association (p=3.0e-08) | Large GWAS |
| rs78521699 | — | GWAS association (p=3.0e-08) | Large GWAS |
| rs1129038 | HERC2 | GWAS association (p=4.0e-08) | Large GWAS |
| rs3814231 | CASP7 | GWAS association (p=4.0e-08) | Large GWAS |
| rs12421615 | — | GWAS association (p=5.0e-08) | Large GWAS |
| rs3213758 | RPGRIP1L | GWAS association (p=6.0e-11) | Small GWAS |
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.