rs4766578

This is a intron variant variant in the ATXN2 gene.

GWAS Catalog Trait Associations (61)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

erythrocyte count

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele T
OR 0.03
p 1.0e-39
N 405,357
Major Consortium StudyLarge GWAS
European

smoking initiation

Saunders GRB et al. Genetic diversity fuels gene discovery for tobacco and alcohol use. Nature 612(7941):720-724 (2022)
Allele A
OR 0.01
p 2.0e-30
N 3,382,012
Large GWAS
European, East Asian, Hispanic or Latin American, African unspecified
Allele A
OR 1.02
p 1.0e-8
N 842,717
Meta-analysisLarge GWAS
European
Allele A
OR 0.01
p 3.0e-8
N 433,216
Meta-analysisLarge GWAS
European

monocyte count

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele T
OR 0.04
p 4.0e-30
N 374,014
Major Consortium StudyLarge GWAS
multi-ancestry

gout

Major TJ et al. A genome-wide association analysis reveals new pathogenic pathways in gout. Nature Genetics 56(11):2392-2406 (2024)
Allele A
OR 0.95
p 3.0e-29
N 2,206,883
Large GWAS
European

essential hypertension

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele T
OR 0.05
p 5.0e-29
N 427,704
Major Consortium StudyLarge GWAS
European

diastolic blood pressure change measurement

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele T
OR 0.03
p 1.0e-28
N 609,486
Major Consortium StudyLarge GWAS
multi-ancestry

hypertension

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele T
OR 0.05
p 8.0e-28
N 428,138
Major Consortium StudyLarge GWAS
European

aspartate aminotransferase to alanine aminotransferase ratio

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele T
OR 0.03
p 2.0e-25
N 389,192
Major Consortium StudyLarge GWAS
European

C-C motif chemokine 19 level

Allele A
OR 0.06
p 3.0e-25
N 47,745
Large GWAS
European

sodium measurement

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele T
OR 0.03
p 3.0e-23
N 603,171
Major Consortium StudyLarge GWAS
multi-ancestry

About ATXN2

This gene belongs to a group of genes that is associated with microsatellite-expansion diseases, a class of neurological and neuromuscular disorders caused by expansion of short stretches of repetitive DNA. The protein encoded by this gene has two globular domains near the N-terminus, one of which contains a clathrin-mediated trans-Golgi signal and an endoplasmic reticulum exit signal. The encoded cytoplasmic protein localizes to the endoplasmic reticulum and plasma membrane, is involved in endocytosis, and modulates mTOR signals, modifying ribosomal translation and mitochondrial function. The N-terminal region of the protein contains a polyglutamine tract of 14-31 residues that can be expanded in the pathogenic state to 32-200 residues. Intermediate length expansions of this tract increase susceptibility to amyotrophic lateral sclerosis, while long expansions of this tract result in spinocerebellar ataxia-2, an autosomal-dominantly inherited, neurodegenerative disorder. Genome-wide association studies indicate that loss-of-function mutations in this gene may be associated with susceptibility to type I diabetes, obesity and hypertension. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2016]

View all ATXN2 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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