rs9652490

This is a downstream gene variant variant in the LINGO1 gene.

GWAS Catalog Trait Associations (1)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

essential tremor

Stefansson H et al. Variant in the sequence of the LINGO1 gene confers risk of essential tremor. Nature Genetics 41(3):277-9 (2009)
Allele G
OR 1.55
p 1.0e-9
N 14,830
Large GWAS
European

Research that mentions this SNP (5)

Genetic analysis of “leucine‐rich repeat (LRR) and immunoglobulin (Ig) domain‐containing, Nogo receptor‐interacting protein‐1 (LINGO1)” in two independent Chinese parkinson's disease populations
AssociationN=47Yih‐Ru Wu et al.(2011)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

A pilot association study examining single nucleotide variants rs6280 in DRD3 and rs9652490 in LINGO1 genes and their association with levodopa-induced dyskinesias (drug dyskinesia) in Parkinson's disease patients from Yakutia, Russia. The study of 47 PD patients (7 with dyskinesias, 40 without) found no statistically significant association between either SNV and drug dyskinesia development (p > 0.05), though longer levodopa therapy duration and higher equivalent daily levodopa doses were significantly associated with dyskinesia risk.

Traits studied:Drug-induced movement disordersLevodopa-induced dyskinesiasParkinson's disease
Gamma-aminobutyric acid (GABA) receptor rho (GABRR) polymorphisms and risk for essential tremor
AssociationN=450Elena García-Martín et al.(2011)· Journal of Neurology

Case-control study of 200 essential tremor (ET) patients and 250 healthy Spanish controls found no significant associations between GABRR1/GABRR2/GABRR3 polymorphisms (rs12200969, rs1186902, rs282129, rs832032) and ET risk. The GABRR polymorphisms were also unrelated to age of onset, tremor localization, or response to ethanol treatment.

Traits studied:Essential tremor
LINGO1 polymorphisms are associated with essential tremor in Europeans
AssociationN=542Sandra Thier et al.(2010)· Movement Disorders

Case-control study of 542 Taiwanese subjects (273 ET patients, 269 controls) demonstrating association of the SLC1A2 rs3794087 A allele with essential tremor (OR=1.37, 95% CI 1.02-1.86, p=0.03), confirming a previous European GWAS finding in an Asian population.

Traits studied:Essential tremor
Role of LINGO1 polymorphisms in Parkinson's disease
AssociationN=694Dietrich Haubenberger et al.(2009)· Movement Disorders

This case-control study examined whether LINGO1 gene variants (rs9652490, rs11856808, rs7177008) associated with essential tremor also confer risk for Parkinson's disease in an Austrian population of 349 PD patients and 345 controls. No significant associations were found between any LINGO1 SNP genotypes or alleles and PD (rs9652490 p=0.61), nor in the subgroup of tremor-dominant PD patients (n=34, p=0.76). The findings argue against a major role of LINGO1 variants in PD susceptibility despite the documented clinical overlap between the two disorders.

Traits studied:Essential tremorParkinson's disease
Alpha‐synuclein polymorphisms are associated with Parkinson's disease in a Saskatchewan population
AssociationN=694Alex Rajput et al.(2009)· Movement Disorders

This case-control study investigated whether LINGO1 gene polymorphisms associated with essential tremor also confer risk for Parkinson's disease (PD). Three SNPs (rs9652490, rs11856808, rs7177008) were genotyped in 349 PD patients and 345 controls from Austria. No significant associations were found between any LINGO1 variants and PD risk overall (p=0.61 for rs9652490) or in tremor-dominant PD patients, arguing against a major role of LINGO1 variants in PD susceptibility.

Traits studied:Essential tremorParkinson's diseaseTremor-dominant Parkinson's disease

About LINGO1

Predicted to enable epidermal growth factor receptor binding activity. Predicted to act upstream of or within negative regulation of oligodendrocyte differentiation; negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; and neuron development. Predicted to be located in plasma membrane. Predicted to be active in several cellular components, including extracellular space; glutamatergic synapse; and presynapse. Implicated in autosomal recessive intellectual developmental disorder 64 and glaucoma. [provided by Alliance of Genome Resources, Jul 2025]

View all LINGO1 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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