NLGN1
neuroligin 1
Summary
This gene encodes a member of a family of neuronal cell surface proteins. Members of this family may act as splice site-specific ligands for beta-neurexins and may be involved in the formation and remodeling of central nervous system synapses. [provided by RefSeq, Jul 2008]
Known Variants92 total
| rsid | Position (GRCh37) | Alleles | Class | ClinVar |
|---|---|---|---|---|
| rs556464 | 3:173,113,680 | C/A | — | — |
| rs546738 | 3:173,117,548 | T/G | intron variant | — |
| rs472103 | 3:173,122,492 | A/C | intron variant | — |
| rs11709498 | 3:173,180,633 | A/C | intron variant | — |
| rs2473589767 | 3:173,322,407 | A/G | — | uncertain significance |
| rs2473590245 | 3:173,322,441 | C/A | — | uncertain significance |
| rs763059049 | 3:173,322,459 | G/A | — | uncertain significance |
| rs1751083651 | 3:173,322,462 | T/A | — | uncertain significance |
| rs374001658 | 3:173,322,470 | C/G | — | likely benign |
| rs750281465 | 3:173,322,499 | G/A | — | likely benign |
| rs774580240 | 3:173,322,590 | G/C | — | likely benign |
| rs2473592833 | 3:173,322,596 | A/G | — | uncertain significance |
| rs775571610 | 3:173,322,597 | A/G | — | uncertain significance |
| rs2473593034 | 3:173,322,609 | T/G | — | uncertain significance |
| rs1751121113 | 3:173,322,647 | G/T | — | uncertain significance |
| rs780824820 | 3:173,322,650 | C/T | — | uncertain significance |
| rs1751123722 | 3:173,322,654 | C/T | — | risk factor |
| rs749776633 | 3:173,322,666 | G/A | — | conflicting classifications of pathogenicity |
| rs746042193 | 3:173,322,683 | G/C | — | uncertain significance |
| rs140900040 | 3:173,322,686 | C/T | — | uncertain significance |
| rs773132929 | 3:173,322,695 | C/T | — | uncertain significance |
| rs150137049 | 3:173,322,736 | G/A | — | benign |
| rs2473596025 | 3:173,322,831 | A/G | — | uncertain significance |
| rs981103140 | 3:173,322,871 | G/A | — | likely benign |
| rs1502492 | 3:173,364,162 | G/A | downstream gene variant | — |
| rs10936767 | 3:173,397,340 | A/T | intron variant | — |
| rs1488564 | 3:173,453,868 | A/C | — | — |
| rs6779753 | 3:173,462,988 | T/G | intron variant | — |
| rs976683 | 3:173,485,371 | C/A | — | — |
| rs77343837 | 3:173,518,088 | C/T | — | likely benign |
| rs145348450 | 3:173,525,475 | C/T | — | uncertain significance |
| rs75838911 | 3:173,525,507 | G/A | — | benign |
| rs2546650969 | 3:173,525,511 | A/G | — | uncertain significance |
| rs1034744585 | 3:173,525,604 | T/A | — | uncertain significance |
| rs779083189 | 3:173,525,621 | C/T | — | likely benign |
| rs2546651858 | 3:173,525,622 | G/A | — | uncertain significance |
| rs1488547 | 3:173,525,768 | A/T | — | — |
| rs9835385 | 3:173,602,528 | A/T | — | — |
| rs59489841 | 3:173,710,695 | C/G | — | — |
| rs9832402 | 3:173,742,542 | A/T | — | — |
| rs1117619 | 3:173,747,092 | C/T | — | — |
| rs1017189 | 3:173,910,091 | A/T | — | — |
| rs1421418 | 3:173,924,058 | T/G | intron variant | — |
| rs4894658 | 3:173,928,736 | C/G | intron variant | — |
| rs13074635 | 3:173,940,990 | C/G | intron variant | — |
| rs992673957 | 3:173,993,161 | A/T | — | uncertain significance |
| rs2548762559 | 3:173,993,233 | G/T | — | uncertain significance |
| rs1750373491 | 3:173,993,264 | T/C | — | risk factor |
| rs143069241 | 3:173,993,297 | G/A | — | uncertain significance |
| rs1751075634 | 3:173,996,681 | G/A | — | risk factor |
| rs147487792 | 3:173,996,704 | G/A | — | uncertain significance |
| rs749502013 | 3:173,996,720 | C/A | — | uncertain significance |
| rs115286304 | 3:173,996,733 | A/G | — | benign |
| rs1158418571 | 3:173,996,759 | A/G | — | uncertain significance |
| rs1025774287 | 3:173,996,778 | G/A | — | likely benign |
| rs2548790593 | 3:173,996,826 | A/C | — | uncertain significance |
| rs1751141505 | 3:173,996,984 | A/G | — | uncertain significance |
| rs1244575408 | 3:173,996,992 | G/T | — | uncertain significance |
| rs76946997 | 3:173,996,996 | G/A | — | likely benign |
| rs566888322 | 3:173,997,064 | T/C | — | likely benign |
| rs61750377 | 3:173,997,099 | T/C | — | benign |
| rs7646919 | 3:173,997,153 | G/A | — | benign |
| rs200258151 | 3:173,997,210 | G/A | — | likely benign |
| rs370462767 | 3:173,997,240 | G/T | — | likely benign |
| rs1490375021 | 3:173,997,259 | C/T | — | uncertain significance |
| rs774940568 | 3:173,997,260 | A/T | — | uncertain significance |
| rs752889815 | 3:173,997,365 | C/T | — | uncertain significance |
| rs1751216362 | 3:173,997,388 | G/A | — | uncertain significance |
| rs2548794862 | 3:173,997,433 | A/G | — | uncertain significance |
| rs776117436 | 3:173,997,447 | A/G | — | likely benign |
| rs1279998923 | 3:173,998,288 | T/A | — | uncertain significance |
| rs774564753 | 3:173,998,394 | A/T | — | uncertain significance |
| rs1751383874 | 3:173,998,440 | T/G | — | uncertain significance |
| rs371260889 | 3:173,998,585 | A/G | — | uncertain significance |
| rs765260803 | 3:173,998,593 | C/G | — | uncertain significance |
| rs115881871 | 3:173,998,631 | G/A | — | benign |
| rs1751416879 | 3:173,998,641 | A/G | — | uncertain significance |
| rs1466970348 | 3:173,998,767 | C/T | — | uncertain significance |
| rs118079207 | 3:173,998,768 | G/T | — | uncertain significance |
| rs760449914 | 3:173,998,780 | A/G | — | uncertain significance |
| rs143237072 | 3:173,998,784 | T/G | — | likely benign |
| rs758964856 | 3:173,998,812 | A/G | — | uncertain significance |
| rs1428268220 | 3:173,998,833 | A/G | — | uncertain significance |
| rs368695944 | 3:173,998,890 | G/A | — | likely benign |
| rs16858840 | 3:173,998,955 | C/T | — | benign |
| rs140977569 | 3:173,998,964 | T/C | — | benign |
| rs2548804496 | 3:173,998,989 | G/A | — | uncertain significance |
| rs2548804620 | 3:173,999,005 | A/G | — | uncertain significance |
| rs921946194 | 3:173,999,041 | C/T | — | uncertain significance |
| rs150613434 | 3:173,999,058 | C/T | — | likely benign |
| rs2548805373 | 3:173,999,085 | A/G | — | uncertain significance |
| rs568763160 | 3:173,999,093 | G/A | — | uncertain significance |
Gene information from NCBI Gene. Variant classifications from ClinVar.