rs11264341

This variant is located in the TRIM46 gene.

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GWAS Catalog Trait Associations (11)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

uric acid measurement

Sakaue S et al. “A cross-population atlas of genetic associations for 220 human phenotypes.” Nature Genetics 53(10):1415-1424 (2021)
Allele T
OR 0.04
p 2.0e-82
N 473,241
Large GWAS
multi-ancestry
Nakatochi M et al. “Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.” Communications Biology 2:115 (2019)
Allele T
OR 0.04
p 8.0e-18
N 121,745
Meta-analysisLarge GWAS
multi-ancestry

serum urea amount

Sinnott-Armstrong N et al. “Genetics of 35 blood and urine biomarkers in the UK Biobank.” Nature Genetics 53(2):185-194 (2021)
Allele T
OR 0.04
p 1.0e-70
N 355,637
Major Consortium StudyLarge GWAS
multi-ancestry

urate measurement

Sinnott-Armstrong N et al. “Genetics of 35 blood and urine biomarkers in the UK Biobank.” Nature Genetics 53(2):185-194 (2021)
Allele T
OR 0.04
p 8.0e-69
N 355,426
Major Consortium StudyLarge GWAS
multi-ancestry
Boocock J et al. “Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.” Human Molecular Genetics 29(6):923-943 (2020)
Allele T
OR 0.05
p 4.0e-18
N 131,709
Large GWAS
multi-ancestry
Köttgen A et al. “Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.” Nature Genetics 45(2):145-54 (2013)
Allele T
OR 0.05
p 6.0e-19
N 110,347
Large GWAS
European

gout

Major TJ et al. “A genome-wide association analysis reveals new pathogenic pathways in gout.” Nature Genetics 56(11):2392-2406 (2024)
Allele T
OR 0.90
p 3.0e-64
N 1,011,521
Large GWAS
European
Verma A et al. “Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program.” Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele T
OR 0.10
p 2.0e-52
N 440,023
Major Consortium StudyLarge GWAS
European
Sumpter NA et al. “Association of Gout Polygenic Risk Score With Age at Disease Onset and Tophaceous Disease in European and Polynesian Men With Gout.” Arthritis & Rheumatology (hoboken, N.j.) 75(5):816-825 (2023)
Allele T
OR 1.12
p 1.0e-10
N 332,370
Large GWAS
European

serum gamma-glutamyl transferase measurement

Sinnott-Armstrong N et al. “Genetics of 35 blood and urine biomarkers in the UK Biobank.” Nature Genetics 53(2):185-194 (2021)
Allele T
OR 0.04
p 1.0e-63
N 355,690
Major Consortium StudyLarge GWAS
multi-ancestry

drug use measurement, gout

Verma A et al. “Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program.” Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele C
OR 0.11
p 2.0e-25
N 315,668
Major Consortium StudyLarge GWAS
European

calcium measurement

Sinnott-Armstrong N et al. “Genetics of 35 blood and urine biomarkers in the UK Biobank.” Nature Genetics 53(2):185-194 (2021)
Allele T
OR 0.03
p 3.0e-24
N 325,659
Major Consortium StudyLarge GWAS
multi-ancestry

serum alanine aminotransferase amount

Sinnott-Armstrong N et al. “Genetics of 35 blood and urine biomarkers in the UK Biobank.” Nature Genetics 53(2):185-194 (2021)
Allele T
OR 0.02
p 4.0e-23
N 355,729
Major Consortium StudyLarge GWAS
multi-ancestry

aspartate aminotransferase measurement

Sinnott-Armstrong N et al. “Genetics of 35 blood and urine biomarkers in the UK Biobank.” Nature Genetics 53(2):185-194 (2021)
Allele T
OR 0.02
p 2.0e-22
N 354,541
Major Consortium StudyLarge GWAS
multi-ancestry

blood phosphate measurement

Sinnott-Armstrong N et al. “Genetics of 35 blood and urine biomarkers in the UK Biobank.” Nature Genetics 53(2):185-194 (2021)
Allele T
OR 0.02
p 2.0e-15
N 325,141
Major Consortium StudyLarge GWAS
multi-ancestry
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Research that mentions this SNP (1)

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Epigenetic and genetic variation in GATA5 is associated with gastric disease risk
AssociationN=289Sobota RS et al.(2016)· Human Genetics

A discovery and replication study of 130 and 159 Colombian patients examining genetic and epigenetic variation in GATA5 associated with gastric disease progression. Two synonymous SNPs in GATA5 (rs6061243 and rs6587239) were significantly associated with histopathology scores in dominant-effect models (p = 2.63×10⁻⁷ and 7.97×10⁻⁷, respectively, β = -0.86 and -0.82) and replicated in additive/dominant models. GATA5 promoter methylation was independently associated with disease progression (p = 0.001), and a significant SNP-by-methylation interaction indicated non-linear combined effects on gastric lesion severity.

Traits studied:Atrophic gastritisDysplasiaGastric cancerGastric disease progressionGastritisIntestinal metaplasia
PubMedDOIMetascience Observatory

About TRIM46

This gene encodes a protein of the tripartite motif (TRIM) family. The TRIM motif includes zinc-binding domains, a RING finger region, a B-box motif and a coiled-coil domain. TRIM46 is reported to be involved in the proliferation of multiple types of cancer cells including lung and breast cancer. It has also been shown to control neuronal polarity and axon specification by forming uniform microtubule bundles in the axon. [provided by RefSeq, May 2022]

View all TRIM46 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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