rs1491942
This is a regulatory region variant variant in the LRRK2 gene.
▶GWAS Catalog Trait Associations (3)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
GWAS Catalog Trait Associations (3)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
Parkinson disease
serum alanine aminotransferase amount
aspartate aminotransferase measurement
▶Research that mentions this SNP (4)
▶SNCA rs356219 variant increases risk of sporadic Parkinson's disease in ethnic ChineseAssociationN=145,932Nan‐Nan Li et al.(2013)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics
This is a German dissertation containing two peer-reviewed association studies on Parkinson's disease genetics. The first study found EIF4G1 is neither a strong nor common PD risk factor in European cohorts (2146 patients), with the p.Arg1205His variant showing no significant association (OR=1.3, p=0.50) in Icelandic population. The second study demonstrated heterozygous PARK2 CNV carriers have increased PD risk in Iceland (1415 cases vs 40474 controls, OR=1.7, p=0.03), supported by meta-analysis.
▶SNCA: Major genetic modifier of age at onset of Parkinson's diseaseAssociationN=145,900Kathrin Brockmann et al.(2013)· Movement Disorders
German doctoral dissertation investigating genetic risk factors for Parkinson's disease in the Icelandic population. The thesis comprises three studies: (1) Analysis of EIF4G1 gene mutations (p.Ala502Val, p.Arg1205His) in 2,146 European PD patients and 93,698 Icelandic samples showing EIF4G1 is neither a strong nor common risk factor; (2) Case-control study of PARK2 copy number variants in 1,415 PD patients versus 40,474 controls (≥65 years) demonstrating heterozygous PARK2 CNV carriers have significantly increased PD risk (OR=1.69, p=0.03); (3) Investigation of common genetic PD risk variants' effects on LRRK2 G2019S mutation carriers.
▶Common variation in the LRRK2 gene is a risk factor for Parkinson's diseaseAssociationN=6,129Ignacio F. Mata et al.(2012)· Movement Disorders
This two-tier case-control study examined common variation in LRRK2 in European-ancestry populations and found two independent association signals with Parkinson's disease risk. rs10878226 (promoter region) conferred increased risk (OR 1.20, 95% CI 1.08-1.33, p=6.3×10⁻⁴), while rs11176013 (exon 34, K1637K) conferred reduced risk (OR 0.89, 95% CI 0.83-0.95, p=4.6×10⁻⁴), with both signals successfully replicated across 6,129 total subjects.
▶Clinical Features of Parkinson Disease Patients With Homozygous Leucine-Rich Repeat Kinase 2 G2019S MutationsAssociationN=95,844Lianna Ishihara et al.(2006)· Archives of Neurology
Large European association study evaluating EIF4G1 mutations in Parkinson's disease across 2,146 PD patients and 93,698 Icelandic population samples. The p.Arg1205His variant (rs112176450) showed no significant association with PD risk (OR=1.3, p=0.50), and p.Ala502Val was not detected. The study concludes EIF4G1 is neither a strong nor common PD risk factor and should not be recommended for clinical diagnostic testing.
About LRRK2
This gene is a member of the leucine-rich repeat kinase family and encodes a protein with an ankryin repeat region, a leucine-rich repeat (LRR) domain, a kinase domain, a DFG-like motif, a RAS domain, a GTPase domain, a MLK-like domain, and a WD40 domain. The protein is present largely in the cytoplasm but also associates with the mitochondrial outer membrane. Mutations in this gene have been associated with Parkinson disease-8. [provided by RefSeq, Jul 2008]
View all LRRK2 variants →Gene information from NCBI Gene. Variant classifications from ClinVar.
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