rs2242652

This is a intron variant variant in the TERT gene.

GWAS Catalog Trait Associations (9)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

lipoma

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele G
OR 0.13
p 2.0e-15
N 433,641
Major Consortium StudyLarge GWAS
European

nontoxic goiter

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele G
OR 0.11
p 4.0e-13
N 625,682
Major Consortium StudyLarge GWAS
multi-ancestry

female genital tract polyp

Allele G
OR 0.94
p 7.0e-11
N 457,977
Large GWAS
European

prostate cancer

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele G
OR 0.14
p 9.0e-31
N 367,640
Major Consortium StudyLarge GWAS
multi-ancestry
Harris BHL et al. New role of fat-free mass in cancer risk linked with genetic predisposition. Scientific Reports 14(1):7270 (2024)
Allele G
OR 0.16
p 5.0e-13
N 151,994
Large GWAS
European

prostate carcinoma

Allele G
OR 1.16
p 1.0e-89
N 726,828
Large GWAS
European
Allele G
OR 1.17
p 5.0e-12
N 421,142
Large GWAS
European
Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele G
OR 0.17
p 2.0e-68
N 411,042
Major Consortium StudyLarge GWAS
European
Allele G
OR 1.17
p 4.0e-52
N 140,254
Large GWAS
European
Allele G
OR 1.16
p 7.0e-15
N 27,420
Meta-analysisLarge GWAS
East Asian
Allele G
OR 1.15
p 3.0e-24
N 13,560
Large GWAS
multi-ancestry

urinary bladder cancer

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele G
OR 0.18
p 6.0e-21
N 448,150
Major Consortium StudyLarge GWAS
European

ClinVar annotation

Benign☆☆☆
2 submitters1 publication

Dyskeratosis congenita, autosomal dominant 2; Idiopathic Pulmonary Fibrosis

View on ClinVar →

Research that mentions this SNP (6)

TERT gene polymorphisms are associated with chronic obstructive pulmonary disease risk in the Chinese Li population
AssociationN=569Yipeng Ding et al.(2019)· Molecular Genetics &amp; Genomic Medicine

This case-control study examined TERT gene polymorphisms in a Chinese Li population and found three SNPs significantly associated with COPD risk. The dominant model of rs10069690 showed increased COPD susceptibility (OR=1.56, 95% CI=1.01-2.43, p=0.046), while rs2853677 demonstrated significant associations in both codominant (p=0.033) and dominant models (p=0.009), suggesting TERT polymorphisms contribute to COPD pathogenesis.

Traits studied:COPDChronic obstructive pulmonary disease
A genome-wide association study of prostate cancer in West African men
AssociationN=932Michael Blaise Cook et al.(2014)· Human Genetics

Genome-wide association study of 474 prostate cancer cases and 458 controls from West African men identified a novel prostate cancer susceptibility locus at 10p14 marked by rs7918885 (p=1.29×10⁻⁷), localized to an intron of the lncRNA gene RP11-543F8.2. A stratified analysis by Gleason score revealed additional associations including rs34575154 in PCDHA1 at 5q31.3 (p=3.66×10⁻⁸) for high-grade disease and rs985081 at Xq28 (p=8.66×10⁻⁹) for low-grade disease. Validation in the African Ancestry Prostate Cancer GWAS Consortium showed limited replication, with only rs2993385 at 10p14 reaching nominal significance (p<0.05), highlighting population-specific genetic architecture.

Traits studied:Prostate cancerProstate cancer (high-grade/Gleason score ≥7)Prostate cancer (low-grade/Gleason score <7)
Telomere length, telomere‐related genes, and breast cancer risk: The breast cancer health disparities study
AssociationN=8,123Andrew J. Pellatt et al.(2013)· Genes, Chromosomes and Cancer

This case-control study of 3,754 breast cancer cases and 4,369 controls from admixed US and Mexican women examined telomere length (TL) and nine telomere-related genes. Longer TL was associated with increased breast cancer risk (OR 1.87, 95% CI 1.38-2.55), with strongest association among women with ≥70% Indigenous American ancestry (OR 3.11, 95% CI 1.74-5.67). Multiple SNPs showed associations with breast cancer risk, including TEP1 rs938886 (OR 0.82), TERT rs4246742 (OR 0.85), TERT rs2242652 (OR 1.51), TERF2 rs3785074 (OR 1.13), and TNKS rs6990300 (OR 0.89). Several SNPs showed differential associations by hormone receptor status and genetic ancestry.

Traits studied:Breast cancerBreast cancer by hormone receptor status (ER/PR)
TERT's role in colorectal carcinogenesis
AssociationN=6,225Andrew J. Pellatt et al.(2013)· Molecular Carcinogenesis

Case-control study of 1,555 colon cancer cases and 1,956 controls, plus 754 rectal cancer cases and 959 controls, examining seven TERT SNPs. TERT rs2736118 was associated with increased colon cancer risk (OR=1.31, 95% CI 1.02-1.69), while TERT-CLPTM1L rs2853668 was inversely associated with both colon (OR=0.71, 95% CI 0.55-0.92) and rectal cancer (OR=0.62, 95% CI 0.43-0.90). Three TERT SNPs (rs10069690, rs2242652, rs4246742) showed significant interactions with BMI to influence colon cancer risk, and rs2853668 interacted with aspirin/NSAID use.

Traits studied:CIMP+ tumorsColon cancerColorectal cancerMSI tumorsRectal cancer
Genetic variants in telomere-maintaining genes and skin cancer risk
AssociationN=1,673Hongmei Nan et al.(2011)· Human Genetics

A nested case-control study in the Nurses' Health Study examined associations between 39 SNPs in telomere-maintaining genes (TERT, TRF1, TRF2, TNKS2, POT1) and skin cancer risk in 803 cases (218 melanoma, 285 SCC, 300 BCC) and 870 controls. Two SNPs in TERT (rs2853676 [T] OR=1.43, rs2242652 [A] OR=1.50) and one in TRF1 (rs2981096 [G] OR=1.87) showed significant associations with melanoma risk. The rs401681[C] variant in TERT-CLPTM1L was replicated for melanoma risk (OR=0.73), and was associated with shorter telomere length.

Traits studied:Basal cell carcinomaMelanomaSkin cancerSquamous cell carcinomaTelomere length
Telomere length and genetic analyses in population‐based studies of endometrial cancer risk
AssociationN=2,359Jennifer Prescott et al.(2010)· Cancer

This nested case-control study examined the association between relative telomere length and genetic variants in telomere maintenance genes (TERT, TNKS2, POT1, TERF1, TERF2) with endometrial cancer risk in 674 cases and 1,685 controls. Relative telomere length was not significantly associated with endometrial cancer risk (OR=1.20, 95% CI=0.73-1.96). However, variants rs2736122 in TERT (OR=1.18, 95% CI=1.01-1.38) and rs12412538 in TNKS2 (OR=1.16, 95% CI=1.00-1.34) showed elevated endometrial cancer risk, though these associations did not reach statistical significance after multiple comparisons correction.

Traits studied:Endometrial cancer

About TERT

Telomerase is a ribonucleoprotein polymerase that maintains telomere ends by addition of the telomere repeat TTAGGG. The enzyme consists of a protein component with reverse transcriptase activity, encoded by this gene, and an RNA component which serves as a template for the telomere repeat. Telomerase expression plays a role in cellular senescence, as it is normally repressed in postnatal somatic cells resulting in progressive shortening of telomeres. Deregulation of telomerase expression in somatic cells may be involved in oncogenesis. Studies in mouse suggest that telomerase also participates in chromosomal repair, since de novo synthesis of telomere repeats may occur at double-stranded breaks. Alternatively spliced variants encoding different isoforms of telomerase reverse transcriptase have been identified; the full-length sequence of some variants has not been determined. Alternative splicing at this locus is thought to be one mechanism of regulation of telomerase activity. [provided by RefSeq, Jul 2008]

View all TERT variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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