Trait

SNPs associated with Hepatocellular carcinoma

26 genetic variants across 16 genes have been associated with Hepatocellular carcinoma in published research. Key genes include APOE, GRIK1, HFE.

Associated variants26 total

rsidGeneEffectEvidence
rs738408PNPLA3GWAS association (p=3.0e-93)Meta-analysis
rs58542926TM6SF2GWAS association (p=3.0e-52)Meta-analysis
rs144861591—GWAS association (p=4.0e-20)Meta-analysis
rs3179778HLA-DPA1GWAS association (p=1.0e-13)Meta-analysis
rs4089MIR5705GWAS association (p=1.0e-13)Meta-analysis
rs429358APOEGWAS association (p=1.0e-13)Meta-analysis
rs10069690TERTGWAS association (p=7.0e-13)Meta-analysis
rs12971396IFNL3GWAS association (p=3.0e-10)Meta-analysis
rs2642442MTARC1GWAS association (p=4.0e-09)Meta-analysis
rs7628416—GWAS association (p=2.0e-08)Meta-analysis
rs1042522TP53Increased hepatocellular carcinoma susceptibilityMeta-analysis
rs7574865STAT4Higher risk of hepatocellular carcinomaMeta-analysis
rs9272105—GWAS association (p=5.0e-22)Large GWAS
rs2294915—GWAS association (p=2.0e-19)Large GWAS
rs9275319—GWAS association (p=3.0e-17)Large GWAS
rs2596542MICAGWAS association (p=4.0e-13)Large GWAS
rs58489806—GWAS association (p=3.0e-12)Large GWAS
rs455804GRIK1GWAS association (p=5.0e-10)Large GWAS
rs73613962—GWAS association (p=6.0e-10)Large GWAS
rs8107030IFNL3GWAS association (p=8.0e-10)Large GWAS
rs9275572—GWAS association (p=6.0e-09)Large GWAS
rs2242652TERTGWAS association (p=6.0e-09)Large GWAS
rs708113WNT3AGWAS association (p=1.0e-08)Large GWAS
rs17401966KIF1BGWAS association (p=2.0e-18)Small GWAS
rs2287780MTRRIncreased hepatocellular carcinoma risk in carriersPreliminary work
rs1800562HFEIncreased hepatocellular carcinoma riskPreliminary work

Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.