rs3179865

This is a stop gained variant in the HLA-B gene.

GWAS Catalog Trait Associations (10)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

polyunsaturated fatty acid measurement

Allele G
OR 0.04
p 1.0e-22
N 115,006
Large GWAS
European

linoleic acid measurement

Allele G
OR 0.04
p 6.0e-18
N 115,006
Large GWAS
European

lipid measurement, lipoprotein measurement

Allele G
OR 0.03
p 2.0e-14
N 115,082
Large GWAS
European

blood VLDL cholesterol amount

Allele G
OR 0.03
p 3.0e-11
N 115,082
Large GWAS
European

total cholesterol measurement

Allele G
OR 0.02
p 1.0e-8
N 125,000
Large GWAS
African American or Afro-Caribbean, Sub-Saharan African, African unspecified

About HLA-B

HLA-B belongs to the HLA class I heavy chain paralogues. This class I molecule is a heterodimer consisting of a heavy chain and a light chain (beta-2 microglobulin). The heavy chain is anchored in the membrane. Class I molecules play a central role in the immune system by presenting peptides derived from the endoplasmic reticulum lumen. They are expressed in nearly all cells. The heavy chain is approximately 45 kDa and its gene contains 8 exons. Exon 1 encodes the leader peptide, exon 2 and 3 encode the alpha1 and alpha2 domains, which both bind the peptide, exon 4 encodes the alpha3 domain, exon 5 encodes the transmembrane region and exons 6 and 7 encode the cytoplasmic tail. Polymorphisms within exon 2 and exon 3 are responsible for the peptide binding specificity of each class one molecule. Typing for these polymorphisms is routinely done for bone marrow and kidney transplantation. Hundreds of HLA-B alleles have been described. [provided by RefSeq, Jul 2008]

View all HLA-B variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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