rs3769823

This is a variant in the CASP8 gene that changes a lysine to an arginine.

GWAS Catalog Trait Associations (5)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

basal cell carcinoma

Allele A
OR 1.12
p 4.0e-18
N 304,241
Large GWAS
European

breast cancer, ovarian carcinoma

Allele A
OR
p 1.0e-16
N 295,401
Meta-analysisLarge GWAS

non-melanoma skin carcinoma

Allele G
OR 1.16
p 2.0e-13
N 187,652
Large GWAS

triglyceride measurement

Liu DJ et al. Exome-wide association study of plasma lipids in >300,000 individuals. Nature Genetics 49(12):1758-1766 (2017)
Allele G
OR 0.01
p 2.0e-13
N 297,824
Large GWAS
multi-ancestry

cancer

Guindo-Martínez M et al. The impact of non-additive genetic associations on age-related complex diseases. Nature Communications 12(1):2436 (2021)
Allele G
OR 0.91
p 8.0e-11
N 56,637
Large GWAS
European

ClinVar annotation

Benign★★★
5 submitters3 publications

Autoimmune lymphoproliferative syndrome type 2B; not specified

View on ClinVar →

Research that mentions this SNP (1)

IRF4 rs12203592 functional variant and melanoma survival
Meta-analysisN=140,000Miriam Potrony et al.(2017)· International Journal of Cancer

Genome-wide association meta-analysis of cutaneous melanoma combining pathologically confirmed cases with 23andMe self-reported cases identified 54 genome-wide significant loci. The study confirmed 19 of 21 previously reported loci, revealed complex LD structure at the AHR/AGR3 region (rs117132860, p=3.8×10−21), and identified novel associations including those near MFSD12/FZR1. Key variants included rs12215602 (IRF4), rs16953002 and rs62034121 (FTO), and variants associated with pigmentation phenotypes (hair color, nevus count, sunburn susceptibility).

Traits studied:Childhood sunburnsCutaneous melanomaEase of tanningMelanoma histological subtypes (superficial spreading, nodular, lentigo maligna, acral)Melanoma susceptibilityNevus countPigmentation traits (hair color, skin color, eye color)Telomere length

About CASP8

This gene encodes a member of the cysteine-aspartic acid protease (caspase) family. Sequential activation of caspases plays a central role in the execution-phase of cell apoptosis. Caspases exist as inactive proenzymes composed of a prodomain, a large protease subunit, and a small protease subunit. Activation of caspases requires proteolytic processing at conserved internal aspartic residues to generate a heterodimeric enzyme consisting of the large and small subunits. This protein is involved in the programmed cell death induced by Fas and various apoptotic stimuli. The N-terminal FADD-like death effector domain of this protein suggests that it may interact with Fas-interacting protein FADD. This protein was detected in the insoluble fraction of the affected brain region from Huntington disease patients but not in those from normal controls, which implicated the role in neurodegenerative diseases. Many alternatively spliced transcript variants encoding different isoforms have been described, although not all variants have had their full-length sequences determined. [provided by RefSeq, Jul 2008]

View all CASP8 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

Community Wiki

No community notes yet for this variant. Sign in to start one.

Comments

Sign in to join the discussion.

Loading comments…