rs548234

GWAS Catalog Trait Associations (2)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

systemic lupus erythematosus

Allele G
OR 0.82
p 6.0e-39
N 208,370
Meta-analysisLarge GWAS
East Asian
Allele G
OR 0.10
p 1.0e-35
N 718,496
Large GWAS
multi-ancestry
Allele G
OR 1.25
p 5.0e-12
N 2,252
Large GWAS
East Asian

systemic scleroderma

Allele C
OR 0.07
p 8.0e-11
N 140,706
Large GWAS
multi-ancestry

Research that mentions this SNP (3)

Novel Rheumatoid Arthritis Susceptibility Locus at 22q12 Identified in an Extended UK Genome‐Wide Association Study
AssociationN=8,305Gisela Orozco et al.(2014)· Arthritis &amp; Rheumatology

This extended UK genome-wide association study identified a novel rheumatoid arthritis susceptibility locus at 22q12 (rs1043099, P = 6.9 × 10⁻⁹, OR = 0.84) in 3,034 cases and 5,271 controls, and confirmed 16 previously known RA loci, strengthening evidence for genetic contributors to RA in the UK population.

Traits studied:Rheumatoid arthritis
Rheumatoid arthritis risk allele PTPRC is also associated with response to anti–tumor necrosis factor α therapy
AssociationN=1,283Cui J. et al.(2010)· Arthritis &amp; Rheumatism

This multi-cohort genetic association study of 1,283 RA patients found that the PTPRC/CD45 gene variant rs10919563 (G allele) is associated with favorable response to anti-TNF therapy (OR 0.55, P=0.0001). Of 31 established RA risk alleles tested, only PTPRC reached genome-wide significance for therapy response, with stronger associations in autoantibody-positive patients (OR 0.55, 95% CI 0.39-0.76) compared to seronegative patients.

Traits studied:Response to anti-TNF therapyRheumatoid Arthritis
Most common single‐nucleotide polymorphisms associated with rheumatoid arthritis in persons of European ancestry confer risk of rheumatoid arthritis in African Americans
AssociationN=1,347Hughes LB et al.(2010)· Arthritis &amp; Rheumatism

This study examined 27 previously identified rheumatoid arthritis (RA) risk alleles in 556 autoantibody-positive African-American RA cases and 791 controls. Twenty-four of 27 SNPs showed consistent odds ratios between African-Americans and Europeans; three SNPs (CCR6 rs3093023, TAGAP rs394581, TNFAIP3 rs6920220) showed opposite directions of effect. A genetic risk score analysis indicated that African-American cases were significantly enriched for European RA risk alleles (p=0.00005), suggesting that RA genetic risk factors are largely shared across ancestry groups.

Traits studied:Rheumatoid arthritis

This variant is in our database but has no known associations or PRS memberships yet.

Gene information from NCBI Gene. Variant classifications from ClinVar.

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