rs2266788

This is a upstream gene variant variant in the ZPR1 gene.

GWAS Catalog Trait Associations (40)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

triglyceride measurement

Sinnott-Armstrong N et al. Genetics of 35 blood and urine biomarkers in the UK Biobank. Nature Genetics 53(2):185-194 (2021)
Allele A
OR 0.28
p
N 355,577
Major Consortium StudyLarge GWAS
multi-ancestry
Hoffmann TJ et al. A large electronic-health-record-based genome-wide study of serum lipids. Nature Genetics 50(3):401-413 (2018)
Allele A
OR 0.24
p 5.0e-193
N 94,674
Large GWAS
multi-ancestry
Allele A
OR 0.04
p 3.0e-13
N 5,662
Large GWAS
South Asian

high density lipoprotein cholesterol measurement

Sinnott-Armstrong N et al. Genetics of 35 blood and urine biomarkers in the UK Biobank. Nature Genetics 53(2):185-194 (2021)
Allele A
OR 0.12
p 3.0e-138
N 325,634
Major Consortium StudyLarge GWAS
multi-ancestry
Hoffmann TJ et al. A large electronic-health-record-based genome-wide study of serum lipids. Nature Genetics 50(3):401-413 (2018)
Allele A
OR
β 0.093
p 1.0e-37
N 94,674
Large GWAS
multi-ancestry

apolipoprotein B measurement

Sinnott-Armstrong N et al. Genetics of 35 blood and urine biomarkers in the UK Biobank. Nature Genetics 53(2):185-194 (2021)
Allele A
OR 0.11
p 5.0e-112
N 354,097
Major Consortium StudyLarge GWAS
multi-ancestry

total cholesterol measurement

Sinnott-Armstrong N et al. Genetics of 35 blood and urine biomarkers in the UK Biobank. Nature Genetics 53(2):185-194 (2021)
Allele A
OR 0.10
p 1.0e-108
N 355,858
Major Consortium StudyLarge GWAS
multi-ancestry
Hoffmann TJ et al. A large electronic-health-record-based genome-wide study of serum lipids. Nature Genetics 50(3):401-413 (2018)
Allele A
OR 0.10
p 5.0e-32
N 94,674
Large GWAS
multi-ancestry

low density lipoprotein cholesterol measurement

Sinnott-Armstrong N et al. Genetics of 35 blood and urine biomarkers in the UK Biobank. Nature Genetics 53(2):185-194 (2021)
Allele A
OR 0.10
p 2.0e-91
N 355,197
Major Consortium StudyLarge GWAS
multi-ancestry

triglyceride measurement, metabolic syndrome

Allele A
OR 0.41
p 2.0e-16
N 22,161
Major Consortium StudyLarge GWAS
European

valine measurement

Karjalainen MK et al. Genome-wide characterization of circulating metabolic biomarkers. Nature 628(8006):130-138 (2024)
Allele A
OR 0.06
p 6.0e-16
N 136,016
Large GWAS
multi-ancestry

ClinVar annotation

Risk Factor★★★
3 submitters4 publications

Hypertriglyceridemia 1

View on ClinVar →

Research that mentions this SNP (2)

An NTD-Associated Polymorphism in the 3′ UTR of MTHFD1L can Affect Disease Risk by Altering miRNA Binding
FunctionalMinguzzi S. et al.(2014)· Human Mutation

This functional study demonstrates that the GDF15 3' UTR variant rs1054564 (G>C) results in allele-specific translational repression of GDF15 by microRNA hsa-miR-1233-3p and hsa-miR-873-5p. Using bioinformatics prediction and in vitro luciferase reporter assays in HEK293T and A2058 melanoma cells, the authors show that the rs1054564-G allele creates stronger miRNA binding sites (lower free energy), leading to significantly decreased luciferase activity (P<0.05). Western blots confirmed that transfection of both miRNA mimics significantly decreased endogenous GDF15 expression (P<0.05), with hsa-miR-1233-3p showing significant allele-specific differences (P=0.034).

Traits studied:CancerCardiovascular diseaseChronic heart failureCoronary artery diseaseObesityPeripheral arterial diseaseType 2 diabetes
Risk variants for atrial fibrillation on chromosome 4q25 associate with ischemic stroke
ReviewGretarsdottir S. et al.(2008)· Annals of Neurology

This review examines 15 years of ischemic stroke susceptibility gene research, organized into three periods: early candidate gene studies (1985-1995) testing variants in hemostasis and homocysteine metabolism genes; expansion period with functional variants discovered from other diseases tested on larger stroke cohorts; and current GWAS-driven large-scale genotyping studies. Key findings include identification of susceptibility loci in CELSR1 (rs6007897, rs4044210 in Japanese populations), PITX2 (rs2200733, rs10033464), and other genes involved in lipid metabolism (APOA5, APOCIII, MLXIPL) and signal transduction (PDE4D, ALOX5AP), with evidence that alleles are often shared across diseases and that careful clinical stratification is critical.

Traits studied:Atrial fibrillationCardioembolic strokeCerebral artery diseaseIschemic strokeLarge-vessel atherosclerotic strokeMyocardial infarctionSmall-vessel occlusion strokeThromboembolismVenous thrombosis

About ZPR1

The protein encoded by this gene is found in the cytoplasm of quiescent cells but translocates to the nucleolus in proliferating cells. The encoded protein interacts with survival motor neuron protein (SMN1) to enhance pre-mRNA splicing and to induce neuronal differentiation and axonal growth. Defects in this gene or the SMN1 gene can cause spinal muscular atrophy. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2015]

View all ZPR1 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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