rs2266788
This is a upstream gene variant variant in the ZPR1 gene.
▶GWAS Catalog Trait Associations (40)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
GWAS Catalog Trait Associations (40)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
triglyceride measurement
high density lipoprotein cholesterol measurement
apolipoprotein B measurement
total cholesterol measurement
low density lipoprotein cholesterol measurement
triglyceride measurement, metabolic syndrome
valine measurement
diacylglycerol 44:7 measurement
cholesteryl ester 16:0 measurement
cholesteryl ester 16:1 measurement
▶ClinVar annotation
▶Research that mentions this SNP (2)
▶An NTD-Associated Polymorphism in the 3′ UTR of MTHFD1L can Affect Disease Risk by Altering miRNA BindingFunctionalMinguzzi S. et al.(2014)· Human Mutation
This functional study demonstrates that the GDF15 3' UTR variant rs1054564 (G>C) results in allele-specific translational repression of GDF15 by microRNA hsa-miR-1233-3p and hsa-miR-873-5p. Using bioinformatics prediction and in vitro luciferase reporter assays in HEK293T and A2058 melanoma cells, the authors show that the rs1054564-G allele creates stronger miRNA binding sites (lower free energy), leading to significantly decreased luciferase activity (P<0.05). Western blots confirmed that transfection of both miRNA mimics significantly decreased endogenous GDF15 expression (P<0.05), with hsa-miR-1233-3p showing significant allele-specific differences (P=0.034).
▶Risk variants for atrial fibrillation on chromosome 4q25 associate with ischemic strokeReviewGretarsdottir S. et al.(2008)· Annals of Neurology
This review examines 15 years of ischemic stroke susceptibility gene research, organized into three periods: early candidate gene studies (1985-1995) testing variants in hemostasis and homocysteine metabolism genes; expansion period with functional variants discovered from other diseases tested on larger stroke cohorts; and current GWAS-driven large-scale genotyping studies. Key findings include identification of susceptibility loci in CELSR1 (rs6007897, rs4044210 in Japanese populations), PITX2 (rs2200733, rs10033464), and other genes involved in lipid metabolism (APOA5, APOCIII, MLXIPL) and signal transduction (PDE4D, ALOX5AP), with evidence that alleles are often shared across diseases and that careful clinical stratification is critical.
About ZPR1
The protein encoded by this gene is found in the cytoplasm of quiescent cells but translocates to the nucleolus in proliferating cells. The encoded protein interacts with survival motor neuron protein (SMN1) to enhance pre-mRNA splicing and to induce neuronal differentiation and axonal growth. Defects in this gene or the SMN1 gene can cause spinal muscular atrophy. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2015]
View all ZPR1 variants →Gene information from NCBI Gene. Variant classifications from ClinVar.
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