rs610604

This is a regulatory region variant variant in the TNFAIP3 gene.

GWAS Catalog Trait Associations (7)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

psoriasis vulgaris

Allele G
OR 1.20
p 5.0e-17
N 8,941
Large GWAS
European

myeloid leukocyte count

Allele T
OR 0.02
p 8.0e-15
N 562,243
Large GWAS
European

psoriasis, type 2 diabetes mellitus

Patrick MT et al. Causal Relationship and Shared Genetic Loci between Psoriasis and Type 2 Diabetes through Trans-Disease Meta-Analysis. The Journal of Investigative Dermatology 141(6):1493-1502 (2021)
Allele G
OR 1.09
p 9.0e-15
N 925,490
Meta-analysisLarge GWAS
European

systemic lupus erythematosus

Allele G
OR 0.07
p 5.0e-12
N 718,496
Large GWAS
multi-ancestry

psoriasis

Allele G
OR 1.19
p 9.0e-12
N 2,759
Large GWAS
European

cutaneous psoriasis measurement, psoriasis

Allele G
OR 1.23
p 8.0e-11
N 6,297
Large GWAS
European

psoriatic arthritis

Allele G
OR 1.15
p 8.0e-9
N 26,351
Large GWAS
European

ClinVar annotation

Benign☆☆☆
1 submitter
View on ClinVar →

Research that mentions this SNP (3)

TNFAIP3 gene polymorphisms confer risk for Behcet’s disease in a Chinese Han population
AssociationN=2,137Hong Li et al.(2013)· Human Genetics

This candidate gene association study examined five TNFAIP3 SNPs (rs10499194, rs610604, rs7753873, rs5029928, rs9494885) in 722 Chinese Han Behcet's disease patients and 1,415 controls. The strongest association was rs9494885 with BD (TC genotype OR=2.03, p=1.83×10⁻¹⁰), while rs10499194 and rs7753873 showed weaker associations. The rs9494885 TT genotype was protective (OR=0.50, p=1.23×10⁻¹⁰).

Traits studied:Behcet's disease
Association of a functional polymorphism of PTPN22 encoding a lymphoid protein phosphatase in bilateral Meniere's disease
AssociationN=2,344Jose A. Lopez‐Escamez et al.(2010)· The Laryngoscope

Case-control study of 716 Meniere's disease patients and 1,628 controls using ImmunoChip genotyping identified intronic variants rs3774937 (C allele) and rs4648011 (G allele) in the NFKB1 gene associated with faster hearing loss progression in patients with unilateral sensorineural hearing loss (corrected p=0.009 and p=0.003, respectively). These variants reduced median time to reach hearing stage 3 (≥40 dB) by approximately 2 years. No single variants reached genome-wide significance for MD susceptibility, and these NFKB1 variants did not influence hearing in bilateral MD.

Traits studied:Hearing loss progressionMeniere's diseaseSensorineural hearing loss
Association of TNFAIP3 polymorphism with rheumatic heart disease in Chinese Han population
AssociationN=717Rong Hua et al.(2009)· Immunogenetics

A pair-matched case-control study (239 cases, 478 controls) in the Chinese Han population identified rs582757 in the TNFAIP3 gene as associated with reduced risk of rheumatic heart disease (RHD). The minor C allele showed a per-allele odds ratio of 0.57 (95% CI 0.42-0.78, p=0.000) in the additive model and a 0.54-fold reduced risk under the dominant model. No significant associations were found for SNPs in the TRAF1 or C5 genes.

Traits studied:Rheumatic heart disease

About TNFAIP3

This gene was identified as a gene whose expression is rapidly induced by the tumor necrosis factor (TNF). The protein encoded by this gene is a zinc finger protein and ubiqitin-editing enzyme, and has been shown to inhibit NF-kappa B activation as well as TNF-mediated apoptosis. The encoded protein, which has both ubiquitin ligase and deubiquitinase activities, is involved in the cytokine-mediated immune and inflammatory responses. Several transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2012]

View all TNFAIP3 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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