rs77375493

This is a variant in the JAK2 gene that changes a valine to an phenylalanine.

GWAS Catalog Trait Associations (51)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

drug use measurement, cancer

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele G
OR 1.94
p 4.0e-22
N 315,668
Major Consortium StudyLarge GWAS
European

primary thrombocytopenia

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele G
OR 2.14
p 9.0e-18
N 571,731
Major Consortium StudyLarge GWAS
multi-ancestry

cancer

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele G
OR 1.22
p 8.0e-17
N 315,668
Major Consortium StudyLarge GWAS
European

splenic disease

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele G
OR 2.06
p 4.0e-16
N 570,949
Major Consortium StudyLarge GWAS
multi-ancestry

Abnormal erythrocyte morphology

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele G
OR 2.19
p 1.0e-15
N 568,811
Major Consortium StudyLarge GWAS
multi-ancestry

iron metabolism disease

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele G
OR 1.88
p 1.0e-15
N 630,489
Major Consortium StudyLarge GWAS
multi-ancestry

acquired thrombocytopenia

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele G
OR 1.95
p 1.0e-14
N 628,036
Major Consortium StudyLarge GWAS
multi-ancestry

serum albumin amount

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele G
OR 0.42
p 1.0e-14
N 372,948
Major Consortium StudyLarge GWAS
European

blood urea nitrogen amount

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele G
OR 0.39
p 2.0e-14
N 418,135
Major Consortium StudyLarge GWAS
European

hyperlipidemia

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele G
OR 0.82
p 1.0e-13
N 426,603
Major Consortium StudyLarge GWAS
European

ClinVar annotation

Pathogenic★★★
22 submitters23 publications

Acquired polycythemia vera; Acute myeloid leukemia (AML); Budd-Chiari syndrome (BDCHS); Budd-Chiari syndrome, susceptibility to, somatic; JAK2-related disorder; Myeloproliferative disorder; Polycythemia; Primary familial polycythemia due to EPO receptor mutation; Primary myelofibrosis; Splenomegaly; Thrombocythemia 3 (THCYT3)

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About JAK2

This gene encodes a non-receptor tyrosine kinase that plays a central role in cytokine and growth factor signalling. The primary isoform of this protein has an N-terminal FERM domain that is required for erythropoietin receptor association, an SH2 domain that binds STAT transcription factors, a pseudokinase domain and a C-terminal tyrosine kinase domain. Cytokine binding induces autophosphorylation and activation of this kinase. This kinase then recruits and phosphorylates signal transducer and activator of transcription (STAT) proteins. Growth factors like TGF-beta 1 also induce phosphorylation and activation of this kinase and translocation of downstream STAT proteins to the nucleus where they influence gene transcription. Mutations in this gene are associated with numerous inflammatory diseases and malignancies. This gene is a downstream target of the pleiotropic cytokine IL6 that is produced by B cells, T cells, dendritic cells and macrophages to produce an immune response or inflammation. Disregulation of the IL6/JAK2/STAT3 signalling pathways produces increased cellular proliferation and myeloproliferative neoplasms of hematopoietic stem cells. A nonsynonymous mutation in the pseudokinase domain of this gene disrupts the domains inhibitory effect and results in constitutive tyrosine phosphorylation activity and hypersensitivity to cytokine signalling. This gene and the IL6/JAK2/STAT3 signalling pathway is a therapeutic target for the treatment of excessive inflammatory responses to viral infections. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jul 2020]

View all JAK2 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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