Trait
SNPs associated with Autoimmune Disease Risk
50 genetic variants across 19 genes have been associated with Autoimmune Disease Risk in published research. Key genes include CCL21, CTLA4, CTSH.
Associated variants50 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs2476601 | PTPN22 | GWAS association (p=6.0e-119) | Meta-analysis |
| rs17753641 | — | GWAS association (p=2.0e-29) | Meta-analysis |
| rs11171739 | — | GWAS association (p=2.0e-20) | Meta-analysis |
| rs12619531 | LINC01934 | GWAS association (p=1.0e-18) | Meta-analysis |
| rs74956615 | — | GWAS association (p=2.0e-17) | Meta-analysis |
| rs2542148 | — | GWAS association (p=5.0e-16) | Meta-analysis |
| rs3087243 | CTLA4 | GWAS association (p=5.0e-16) | Meta-analysis |
| rs1250568 | — | GWAS association (p=4.0e-15) | Meta-analysis |
| rs34593439 | CTSH | GWAS association (p=1.0e-14) | Meta-analysis |
| rs212407 | TAGAP-AS1 | GWAS association (p=7.0e-14) | Meta-analysis |
| rs10892299 | — | GWAS association (p=2.0e-13) | Meta-analysis |
| rs60600003 | — | GWAS association (p=4.0e-13) | Meta-analysis |
| rs16878091 | LINC02357 | GWAS association (p=3.0e-12) | Meta-analysis |
| rs13415465 | — | GWAS association (p=4.0e-12) | Meta-analysis |
| rs1893592 | UBASH3A | GWAS association (p=5.0e-12) | Meta-analysis |
| rs7426056 | — | GWAS association (p=7.0e-12) | Meta-analysis |
| rs72928038 | — | GWAS association (p=9.0e-12) | Meta-analysis |
| rs11757201 | — | GWAS association (p=1.0e-11) | Meta-analysis |
| rs35677470 | DNASE1L3 | GWAS association (p=1.0e-11) | Meta-analysis |
| rs1217403 | — | GWAS association (p=5.0e-11) | Meta-analysis |
| rs4731532 | — | GWAS association (p=1.0e-10) | Meta-analysis |
| rs6664969 | MMEL1 | GWAS association (p=3.0e-10) | Meta-analysis |
| rs58721818 | — | GWAS association (p=5.0e-10) | Meta-analysis |
| rs72776098 | — | GWAS association (p=7.0e-10) | Meta-analysis |
| rs2812378 | CCL21 | GWAS association (p=1.0e-09) | Meta-analysis |
| rs1422673 | — | GWAS association (p=2.0e-09) | Meta-analysis |
| rs7574865 | STAT4 | GWAS association (p=3.0e-09) | Meta-analysis |
| rs10912267 | — | GWAS association (p=4.0e-09) | Meta-analysis |
| rs3118470 | IL2RA | GWAS association (p=6.0e-09) | Meta-analysis |
| rs947474 | LINC02656 | GWAS association (p=1.0e-08) | Meta-analysis |
| rs10931468 | NAB1 | GWAS association (p=2.0e-08) | Meta-analysis |
| rs7780389 | — | GWAS association (p=2.0e-08) | Meta-analysis |
| rs8043085 | — | GWAS association (p=2.0e-08) | Meta-analysis |
| rs66534072 | UBE2L3 | GWAS association (p=2.0e-08) | Meta-analysis |
| rs1748041 | — | GWAS association (p=4.0e-08) | Meta-analysis |
| rs1054609 | ZPBP2 | GWAS association (p=4.0e-08) | Meta-analysis |
| rs6749371 | — | GWAS association (p=4.0e-08) | Meta-analysis |
| rs3802604 | — | GWAS association (p=5.0e-08) | Meta-analysis |
| rs1064173 | HLA-DQB1 | GWAS association (p=3.0e-36) | Large GWAS |
| rs3104394 | — | GWAS association (p=3.0e-20) | Large GWAS |
| rs3132940 | — | GWAS association (p=1.0e-15) | Large GWAS |
| rs115884658 | — | GWAS association (p=2.0e-15) | Large GWAS |
| rs4713462 | — | GWAS association (p=2.0e-13) | Large GWAS |
| rs1046080 | PRRC2A | GWAS association (p=2.0e-12) | Large GWAS |
| rs556990455 | LOC112267902 | GWAS association (p=7.0e-11) | Large GWAS |
| rs381218 | — | GWAS association (p=1.0e-10) | Large GWAS |
| rs2071538 | — | GWAS association (p=8.0e-10) | Large GWAS |
| rs194679 | — | GWAS association (p=1.0e-09) | Large GWAS |
| rs3957147 | — | GWAS association (p=9.0e-09) | Large GWAS |
| rs114355928 | — | GWAS association (p=2.0e-08) | Large GWAS |
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.