Trait
SNPs associated with autoimmune thyroid disease, systemic lupus erythematosus, type 1 diabetes mellitus, ankylosing spondylitis, psoriasis, common variable immunodeficiency, celiac disease, ulcerative colitis, Crohn's disease, autoimmune disease, juvenile idiopathic arthritis
28 genetic variants across 9 genes have been associated with autoimmune thyroid disease, systemic lupus erythematosus, type 1 diabetes mellitus, ankylosing spondylitis, psoriasis, common variable immunodeficiency, celiac disease, ulcerative colitis, Crohn's disease, autoimmune disease, juvenile idiopathic arthritis in published research. Key genes include ANKRD55, ATG16L1, CARD9.
Associated variants28 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs6679677 | PHTF1 | GWAS association (p=8.0e-11) | Meta-analysis |
| rs36001488 | ATG16L1 | GWAS association (p=8.0e-11) | Meta-analysis |
| rs7660520 | — | GWAS association (p=8.0e-11) | Meta-analysis |
| rs7725052 | — | GWAS association (p=8.0e-11) | Meta-analysis |
| rs10822050 | — | GWAS association (p=8.0e-11) | Meta-analysis |
| rs17885785 | — | GWAS association (p=8.0e-11) | Meta-analysis |
| rs72743477 | — | GWAS association (p=8.0e-11) | Meta-analysis |
| rs117372389 | — | GWAS association (p=8.0e-11) | Meta-analysis |
| rs11580078 | — | GWAS association (p=8.0e-11) | Meta-analysis |
| rs2066363 | — | GWAS association (p=8.0e-11) | Meta-analysis |
| rs4625 | DAG1 | GWAS association (p=8.0e-11) | Meta-analysis |
| rs7100025 | — | GWAS association (p=8.0e-11) | Meta-analysis |
| rs1332099 | — | GWAS association (p=9.0e-11) | Meta-analysis |
| rs7731626 | ANKRD55 | GWAS association (p=1.0e-10) | Meta-analysis |
| rs755374 | — | GWAS association (p=2.0e-10) | Meta-analysis |
| rs17466626 | LRRK2 | GWAS association (p=3.0e-10) | Meta-analysis |
| rs11741255 | — | GWAS association (p=2.0e-09) | Meta-analysis |
| rs1689510 | — | GWAS association (p=4.0e-09) | Meta-analysis |
| rs12598357 | — | GWAS association (p=4.0e-09) | Meta-analysis |
| rs706778 | IL2RA | GWAS association (p=6.0e-09) | Meta-analysis |
| rs77150043 | — | GWAS association (p=6.0e-09) | Meta-analysis |
| rs4246905 | TNFSF15 | GWAS association (p=1.0e-08) | Meta-analysis |
| rs1250563 | — | GWAS association (p=1.0e-08) | Meta-analysis |
| rs2807264 | — | GWAS association (p=1.0e-08) | Meta-analysis |
| rs62324212 | — | GWAS association (p=3.0e-08) | Meta-analysis |
| rs11145763 | CARD9 | GWAS association (p=3.0e-08) | Meta-analysis |
| rs602662 | FUT2 | GWAS association (p=5.0e-08) | Meta-analysis |
| rs2836882 | — | GWAS association (p=5.0e-08) | Meta-analysis |
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.