rs1012129

This variant is located in the BRCA2 gene.

GWAS Catalog Trait Associations (9)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

low density lipoprotein cholesterol measurement, lipid measurement

Karjalainen MK et al. Genome-wide characterization of circulating metabolic biomarkers. Nature 628(8006):130-138 (2024)
Allele C
OR 0.03
p 7.0e-12
N 136,016
Large GWAS
multi-ancestry

total cholesterol in medium LDL

Karjalainen MK et al. Genome-wide characterization of circulating metabolic biomarkers. Nature 628(8006):130-138 (2024)
Allele C
OR 0.03
p 7.0e-12
N 136,016
Large GWAS
multi-ancestry

total cholesterol in small LDL

Karjalainen MK et al. Genome-wide characterization of circulating metabolic biomarkers. Nature 628(8006):130-138 (2024)
Allele C
OR 0.03
p 7.0e-12
N 136,016
Large GWAS
multi-ancestry

esterified cholesterol measurement, low density lipoprotein cholesterol measurement

Karjalainen MK et al. Genome-wide characterization of circulating metabolic biomarkers. Nature 628(8006):130-138 (2024)
Allele C
OR 0.03
p 9.0e-12
N 136,016
Large GWAS
multi-ancestry

total lipids in small LDL

Karjalainen MK et al. Genome-wide characterization of circulating metabolic biomarkers. Nature 628(8006):130-138 (2024)
Allele C
OR 0.03
p 2.0e-11
N 136,016
Large GWAS
multi-ancestry

free cholesterol in medium LDL measurement

Karjalainen MK et al. Genome-wide characterization of circulating metabolic biomarkers. Nature 628(8006):130-138 (2024)
Allele C
OR 0.03
p 8.0e-11
N 136,016
Large GWAS
multi-ancestry

free cholesterol in small LDL measurement

Karjalainen MK et al. Genome-wide characterization of circulating metabolic biomarkers. Nature 628(8006):130-138 (2024)
Allele C
OR 0.03
p 1.0e-9
N 136,016
Large GWAS
multi-ancestry

sphingomyelin measurement

Karjalainen MK et al. Genome-wide characterization of circulating metabolic biomarkers. Nature 628(8006):130-138 (2024)
Allele C
OR 0.03
p 1.0e-9
N 126,671
Large GWAS
multi-ancestry

low density lipoprotein cholesterol measurement

Karjalainen MK et al. Genome-wide characterization of circulating metabolic biomarkers. Nature 628(8006):130-138 (2024)
Allele C
OR 0.03
p 1.0e-11
N 136,016
Large GWAS
multi-ancestry

ClinVar annotation

Benign★★★★
2 submitters

Breast-ovarian cancer, familial, susceptibility to, 2; not provided

View on ClinVar →

About BRCA2

Inherited mutations in BRCA1 and this gene, BRCA2, confer increased lifetime risk of developing breast or ovarian cancer. Both BRCA1 and BRCA2 are involved in maintenance of genome stability, specifically the homologous recombination pathway for double-strand DNA repair. The largest exon in both genes is exon 11, which harbors the most important and frequent mutations in breast cancer patients. The BRCA2 gene was found on chromosome 13q12.3 in human. The BRCA2 protein contains several copies of a 70 aa motif called the BRC motif, and these motifs mediate binding to the RAD51 recombinase which functions in DNA repair. BRCA2 is considered a tumor suppressor gene, as tumors with BRCA2 mutations generally exhibit loss of heterozygosity (LOH) of the wild-type allele. [provided by RefSeq, May 2020]

View all BRCA2 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

Community Wiki

No community notes yet for this variant. Sign in to start one.

Comments

Sign in to join the discussion.

Loading comments…