Trait
SNPs associated with total cholesterol in medium LDL
98 genetic variants across 42 genes have been associated with total cholesterol in medium LDL in published research. Key genes include ABCA6, ABCG5, ABCG8.
Associated variants98 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs7412 | APOE | GWAS association (p=0.0e+00) | Large GWAS |
| rs646776 | CELSR2 | GWAS association (p=2.0e-215) | Large GWAS |
| rs6511720 | LDLR | GWAS association (p=2.0e-204) | Large GWAS |
| rs11591147 | PCSK9 | GWAS association (p=2.0e-200) | Large GWAS |
| rs12151108 | — | GWAS association (p=4.0e-194) | Large GWAS |
| rs12740374 | CELSR2 | GWAS association (p=2.0e-169) | Large GWAS |
| rs563290 | — | GWAS association (p=7.0e-138) | Large GWAS |
| rs562338 | — | GWAS association (p=7.0e-133) | Large GWAS |
| rs6073958 | — | GWAS association (p=6.0e-110) | Large GWAS |
| rs28601761 | — | GWAS association (p=3.0e-96) | Large GWAS |
| rs1260326 | GCKR | GWAS association (p=1.0e-95) | Large GWAS |
| rs58542926 | TM6SF2 | GWAS association (p=5.0e-89) | Large GWAS |
| rs964184 | APOA5 | GWAS association (p=3.0e-80) | Large GWAS |
| rs12916 | HMGCR | GWAS association (p=1.0e-79) | Large GWAS |
| rs181948526 | — | GWAS association (p=5.0e-47) | Large GWAS |
| rs635634 | — | GWAS association (p=5.0e-41) | Large GWAS |
| rs11751024 | — | GWAS association (p=2.0e-40) | Large GWAS |
| rs4245791 | ABCG8 | GWAS association (p=6.0e-40) | Large GWAS |
| rs1168127 | DOCK7 | GWAS association (p=4.0e-38) | Large GWAS |
| rs12750160 | USP24 | GWAS association (p=1.0e-37) | Large GWAS |
| rs174574 | FADS2 | GWAS association (p=3.0e-36) | Large GWAS |
| rs102274 | TMEM258 | GWAS association (p=3.0e-34) | Large GWAS |
| rs115478735 | ABO | GWAS association (p=3.0e-34) | Large GWAS |
| rs73001065 | — | GWAS association (p=8.0e-34) | Large GWAS |
| rs3764261 | — | GWAS association (p=4.0e-32) | Large GWAS |
| rs11887534 | ABCG5 | GWAS association (p=6.0e-32) | Large GWAS |
| rs7137828 | ATXN2 | GWAS association (p=4.0e-31) | Large GWAS |
| rs12445401 | — | GWAS association (p=8.0e-29) | Large GWAS |
| rs200849733 | — | GWAS association (p=3.0e-27) | Large GWAS |
| rs117113213 | — | GWAS association (p=6.0e-27) | Large GWAS |
| rs59379014 | ST3GAL4 | GWAS association (p=1.0e-26) | Large GWAS |
| rs557933 | — | GWAS association (p=2.0e-25) | Large GWAS |
| rs6475606 | CDKN2B-AS1 | GWAS association (p=8.0e-25) | Large GWAS |
| rs58198139 | — | GWAS association (p=1.0e-24) | Large GWAS |
| rs484084 | — | GWAS association (p=3.0e-23) | Large GWAS |
| rs28929474 | SERPINA1 | GWAS association (p=4.0e-23) | Large GWAS |
| rs2618566 | — | GWAS association (p=5.0e-23) | Large GWAS |
| rs9987289 | LOC157273 | GWAS association (p=6.0e-23) | Large GWAS |
| rs13108218 | — | GWAS association (p=1.0e-22) | Large GWAS |
| rs77542162 | ABCA6 | GWAS association (p=6.0e-22) | Large GWAS |
| rs56325564 | — | GWAS association (p=2.0e-21) | Large GWAS |
| rs73066485 | — | GWAS association (p=3.0e-20) | Large GWAS |
| rs2866372 | — | GWAS association (p=6.0e-20) | Large GWAS |
| rs55714927 | — | GWAS association (p=8.0e-20) | Large GWAS |
| rs79598313 | — | GWAS association (p=3.0e-19) | Large GWAS |
| rs2740488 | — | GWAS association (p=5.0e-19) | Large GWAS |
| rs34596921 | — | GWAS association (p=5.0e-19) | Large GWAS |
| rs41279633 | — | GWAS association (p=9.0e-19) | Large GWAS |
| rs7177289 | — | GWAS association (p=1.0e-18) | Large GWAS |
| rs1458038 | LOC124900725 | GWAS association (p=2.0e-17) | Large GWAS |
| rs6882345 | — | GWAS association (p=3.0e-17) | Large GWAS |
| rs28745910 | — | GWAS association (p=6.0e-17) | Large GWAS |
| rs80254170 | — | GWAS association (p=7.0e-17) | Large GWAS |
| rs10468017 | — | GWAS association (p=7.0e-17) | Large GWAS |
| rs7776156 | — | GWAS association (p=8.0e-17) | Large GWAS |
| rs4722551 | LOC105375199 | GWAS association (p=6.0e-16) | Large GWAS |
| rs7554255 | MACO1 | GWAS association (p=9.0e-16) | Large GWAS |
| rs1461729 | LOC157273 | GWAS association (p=3.0e-15) | Large GWAS |
| rs11621792 | — | GWAS association (p=6.0e-15) | Large GWAS |
| rs6602912 | — | GWAS association (p=8.0e-15) | Large GWAS |
| rs2081687 | — | GWAS association (p=1.0e-14) | Large GWAS |
| rs76970536 | — | GWAS association (p=2.0e-14) | Large GWAS |
| rs34387931 | — | GWAS association (p=2.0e-14) | Large GWAS |
| rs116734477 | ITGA1 | GWAS association (p=3.0e-14) | Large GWAS |
| rs150169808 | — | GWAS association (p=3.0e-14) | Large GWAS |
| rs35081008 | — | GWAS association (p=3.0e-14) | Large GWAS |
| rs3184504 | SH2B3 | GWAS association (p=4.0e-14) | Large GWAS |
| rs36012880 | — | GWAS association (p=5.0e-14) | Large GWAS |
| rs34071855 | — | GWAS association (p=7.0e-14) | Large GWAS |
| rs326 | LPL | GWAS association (p=9.0e-14) | Large GWAS |
| rs7734476 | CSNK1G3 | GWAS association (p=1.0e-13) | Large GWAS |
| rs11601507 | — | GWAS association (p=2.0e-13) | Large GWAS |
| rs4794048 | — | GWAS association (p=6.0e-13) | Large GWAS |
| rs1801689 | APOH | GWAS association (p=1.0e-12) | Large GWAS |
| rs1800961 | HNF4A | GWAS association (p=2.0e-12) | Large GWAS |
| rs9391858 | — | GWAS association (p=4.0e-12) | Large GWAS |
| rs10832954 | SPTY2D1 | GWAS association (p=5.0e-12) | Large GWAS |
| rs61965607 | GPR180 | GWAS association (p=5.0e-12) | Large GWAS |
| rs1012129 | BRCA2 | GWAS association (p=7.0e-12) | Large GWAS |
| rs1168045 | — | GWAS association (p=7.0e-12) | Large GWAS |
| rs12472790 | — | GWAS association (p=1.0e-11) | Large GWAS |
| rs4418728 | — | GWAS association (p=1.0e-11) | Large GWAS |
| rs12046182 | — | GWAS association (p=2.0e-11) | Large GWAS |
| rs6734238 | — | GWAS association (p=3.0e-11) | Large GWAS |
| rs2959271 | PPARG | GWAS association (p=4.0e-11) | Large GWAS |
| rs76428106 | — | GWAS association (p=4.0e-11) | Large GWAS |
| rs2244608 | HNF1A | GWAS association (p=6.0e-11) | Large GWAS |
| rs55990776 | CCDC92 | GWAS association (p=7.0e-11) | Large GWAS |
| rs6667939 | LINC01221 | GWAS association (p=1.0e-10) | Large GWAS |
| rs2427531 | ZGPAT | GWAS association (p=1.0e-10) | Large GWAS |
| rs3750329 | — | GWAS association (p=4.0e-10) | Large GWAS |
| rs72838098 | LOC107985940 | GWAS association (p=4.0e-10) | Large GWAS |
| rs72926966 | — | GWAS association (p=4.0e-10) | Large GWAS |
| rs4902813 | LOC101928046 | GWAS association (p=5.0e-10) | Large GWAS |
| rs9394283 | — | GWAS association (p=5.0e-10) | Large GWAS |
| rs200489612 | DLG4 | GWAS association (p=6.0e-10) | Large GWAS |
| rs4876611 | TRPS1 | GWAS association (p=6.0e-10) | Large GWAS |
| rs8111874 | — | GWAS association (p=1.0e-09) | Large GWAS |
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.