Trait
SNPs associated with free cholesterol in medium LDL measurement
130 genetic variants across 42 genes have been associated with free cholesterol in medium LDL measurement in published research. Key genes include ABCA5, ABCA6, ABCG5.
Associated variants130 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs7412 | APOE | GWAS association (p=0.0e+00) | Large GWAS |
| rs1065853 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs429358 | APOE | GWAS association (p=0.0e+00) | Large GWAS |
| rs12740374 | CELSR2 | GWAS association (p=1.0e-241) | Large GWAS |
| rs62117160 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs7254892 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs646776 | CELSR2 | GWAS association (p=1.0e-198) | Large GWAS |
| rs6511720 | LDLR | GWAS association (p=6.0e-187) | Large GWAS |
| rs375484700 | — | GWAS association (p=8.0e-187) | Large GWAS |
| rs11591147 | PCSK9 | GWAS association (p=3.0e-184) | Large GWAS |
| rs581411 | — | GWAS association (p=2.0e-179) | Large GWAS |
| rs563290 | — | GWAS association (p=4.0e-128) | Large GWAS |
| rs102275 | TMEM258 | GWAS association (p=9.0e-105) | Large GWAS |
| rs12151108 | — | GWAS association (p=1.0e-92) | Large GWAS |
| rs6073958 | — | GWAS association (p=7.0e-77) | Large GWAS |
| rs12916 | HMGCR | GWAS association (p=2.0e-76) | Large GWAS |
| rs3846662 | HMGCR | GWAS association (p=9.0e-76) | Large GWAS |
| rs562338 | — | GWAS association (p=1.0e-65) | Large GWAS |
| rs58542926 | TM6SF2 | GWAS association (p=7.0e-52) | Large GWAS |
| rs2519093 | ABO | GWAS association (p=5.0e-50) | Large GWAS |
| rs12750160 | USP24 | GWAS association (p=4.0e-49) | Large GWAS |
| rs597808 | ATXN2 | GWAS association (p=8.0e-43) | Large GWAS |
| rs11887534 | ABCG5 | GWAS association (p=1.0e-42) | Large GWAS |
| rs4245791 | ABCG8 | GWAS association (p=7.0e-42) | Large GWAS |
| rs635634 | — | GWAS association (p=1.0e-40) | Large GWAS |
| rs181948526 | — | GWAS association (p=2.0e-38) | Large GWAS |
| rs147711004 | — | GWAS association (p=3.0e-37) | Large GWAS |
| rs55925606 | — | GWAS association (p=5.0e-36) | Large GWAS |
| rs115849089 | — | GWAS association (p=4.0e-33) | Large GWAS |
| rs2740488 | — | GWAS association (p=3.0e-32) | Large GWAS |
| rs174574 | FADS2 | GWAS association (p=8.0e-31) | Large GWAS |
| rs4307732 | — | GWAS association (p=2.0e-30) | Large GWAS |
| rs10468017 | — | GWAS association (p=2.0e-30) | Large GWAS |
| rs28601761 | — | GWAS association (p=2.0e-29) | Large GWAS |
| rs73001065 | — | GWAS association (p=3.0e-29) | Large GWAS |
| rs557933 | — | GWAS association (p=3.0e-29) | Large GWAS |
| rs28929474 | SERPINA1 | GWAS association (p=8.0e-29) | Large GWAS |
| rs9987289 | LOC157273 | GWAS association (p=9.0e-29) | Large GWAS |
| rs115478735 | ABO | GWAS association (p=2.0e-28) | Large GWAS |
| rs11749783 | — | GWAS association (p=9.0e-28) | Large GWAS |
| rs7177289 | — | GWAS association (p=3.0e-27) | Large GWAS |
| rs117113213 | — | GWAS association (p=5.0e-27) | Large GWAS |
| rs118170342 | — | GWAS association (p=7.0e-26) | Large GWAS |
| rs11991231 | — | GWAS association (p=1.0e-25) | Large GWAS |
| rs484084 | — | GWAS association (p=2.0e-25) | Large GWAS |
| rs6475606 | CDKN2B-AS1 | GWAS association (p=8.0e-23) | Large GWAS |
| rs12924886 | — | GWAS association (p=1.0e-22) | Large GWAS |
| rs55714927 | — | GWAS association (p=8.0e-22) | Large GWAS |
| rs73066485 | — | GWAS association (p=2.0e-21) | Large GWAS |
| rs34596921 | — | GWAS association (p=3.0e-21) | Large GWAS |
| rs2866372 | — | GWAS association (p=4.0e-21) | Large GWAS |
| rs771193934 | — | GWAS association (p=4.0e-21) | Large GWAS |
| rs2618566 | — | GWAS association (p=8.0e-21) | Large GWAS |
| rs1800961 | HNF4A | GWAS association (p=3.0e-20) | Large GWAS |
| rs821840 | CETP | GWAS association (p=6.0e-20) | Large GWAS |
| rs4299376 | ABCG8 | GWAS association (p=9.0e-20) | Large GWAS |
| rs112875651 | — | GWAS association (p=2.0e-19) | Large GWAS |
| rs79598313 | — | GWAS association (p=2.0e-19) | Large GWAS |
| rs77262773 | ABCA5 | GWAS association (p=2.0e-19) | Large GWAS |
| rs116734477 | ITGA1 | GWAS association (p=3.0e-19) | Large GWAS |
| rs6065904 | PLTP | GWAS association (p=5.0e-19) | Large GWAS |
| rs1260326 | GCKR | GWAS association (p=8.0e-19) | Large GWAS |
| rs12208357 | SLC22A1 | GWAS association (p=2.0e-18) | Large GWAS |
| rs41279633 | — | GWAS association (p=4.0e-18) | Large GWAS |
| rs12948394 | — | GWAS association (p=1.0e-17) | Large GWAS |
| rs1461729 | LOC157273 | GWAS association (p=2.0e-17) | Large GWAS |
| rs3184504 | SH2B3 | GWAS association (p=2.0e-17) | Large GWAS |
| rs11621792 | — | GWAS association (p=2.0e-17) | Large GWAS |
| rs525028 | — | GWAS association (p=6.0e-17) | Large GWAS |
| rs80254170 | — | GWAS association (p=1.0e-16) | Large GWAS |
| rs35081008 | — | GWAS association (p=1.0e-16) | Large GWAS |
| rs150169808 | — | GWAS association (p=2.0e-16) | Large GWAS |
| rs2066905 | MYLIP | GWAS association (p=1.0e-15) | Large GWAS |
| rs6699113 | — | GWAS association (p=5.0e-15) | Large GWAS |
| rs115740542 | — | GWAS association (p=1.0e-14) | Large GWAS |
| rs111278137 | — | GWAS association (p=1.0e-14) | Large GWAS |
| rs1458038 | LOC124900725 | GWAS association (p=2.0e-14) | Large GWAS |
| rs4722551 | LOC105375199 | GWAS association (p=3.0e-14) | Large GWAS |
| rs58198139 | — | GWAS association (p=3.0e-14) | Large GWAS |
| rs77542162 | ABCA6 | GWAS association (p=4.0e-14) | Large GWAS |
| rs4794048 | — | GWAS association (p=7.0e-14) | Large GWAS |
| rs13108218 | — | GWAS association (p=9.0e-14) | Large GWAS |
| rs538711822 | — | GWAS association (p=1.0e-13) | Large GWAS |
| rs78689694 | ST3GAL4 | GWAS association (p=2.0e-13) | Large GWAS |
| rs7714655 | — | GWAS association (p=2.0e-13) | Large GWAS |
| rs6882345 | — | GWAS association (p=3.0e-13) | Large GWAS |
| rs9391858 | — | GWAS association (p=3.0e-13) | Large GWAS |
| rs10448340 | — | GWAS association (p=5.0e-13) | Large GWAS |
| rs117793008 | — | GWAS association (p=7.0e-13) | Large GWAS |
| rs11636952 | — | GWAS association (p=9.0e-13) | Large GWAS |
| rs12150378 | — | GWAS association (p=9.0e-13) | Large GWAS |
| rs7704457 | — | GWAS association (p=1.0e-12) | Large GWAS |
| rs472495 | PCSK9 | GWAS association (p=2.0e-12) | Large GWAS |
| rs10750766 | — | GWAS association (p=2.0e-12) | Large GWAS |
| rs11206517 | — | GWAS association (p=3.0e-12) | Large GWAS |
| rs3794695 | — | GWAS association (p=3.0e-12) | Large GWAS |
| rs12452315 | — | GWAS association (p=3.0e-12) | Large GWAS |
| rs146606466 | — | GWAS association (p=3.0e-12) | Large GWAS |
| rs36012880 | — | GWAS association (p=6.0e-12) | Large GWAS |
| rs6920309 | — | GWAS association (p=6.0e-12) | Large GWAS |
Showing the top 100 of 130 variants by evidence strength.
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.