Trait
SNPs associated with free cholesterol in small LDL measurement
140 genetic variants across 46 genes have been associated with free cholesterol in small LDL measurement in published research. Key genes include ABCA5, ABCA6, ABCG5.
Associated variants140 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs7412 | APOE | GWAS association (p=0.0e+00) | Large GWAS |
| rs1065853 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs429358 | APOE | GWAS association (p=0.0e+00) | Large GWAS |
| rs73015024 | — | GWAS association (p=7.0e-311) | Large GWAS |
| rs12740374 | CELSR2 | GWAS association (p=7.0e-300) | Large GWAS |
| rs581411 | — | GWAS association (p=4.0e-217) | Large GWAS |
| rs747875948 | — | GWAS association (p=3.0e-215) | Large GWAS |
| rs62117160 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs112450640 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs646776 | CELSR2 | GWAS association (p=5.0e-177) | Large GWAS |
| rs6511720 | LDLR | GWAS association (p=2.0e-164) | Large GWAS |
| rs11591147 | PCSK9 | GWAS association (p=8.0e-161) | Large GWAS |
| rs102275 | TMEM258 | GWAS association (p=2.0e-149) | Large GWAS |
| rs563290 | — | GWAS association (p=1.0e-111) | Large GWAS |
| rs12151108 | — | GWAS association (p=1.0e-101) | Large GWAS |
| rs3846662 | HMGCR | GWAS association (p=3.0e-82) | Large GWAS |
| rs562338 | — | GWAS association (p=2.0e-77) | Large GWAS |
| rs10468017 | — | GWAS association (p=2.0e-75) | Large GWAS |
| rs12916 | HMGCR | GWAS association (p=9.0e-68) | Large GWAS |
| rs12750160 | USP24 | GWAS association (p=2.0e-56) | Large GWAS |
| rs41289512 | — | GWAS association (p=3.0e-47) | Large GWAS |
| rs11887534 | ABCG5 | GWAS association (p=3.0e-46) | Large GWAS |
| rs597808 | ATXN2 | GWAS association (p=1.0e-45) | Large GWAS |
| rs28929474 | SERPINA1 | GWAS association (p=2.0e-44) | Large GWAS |
| rs4245791 | ABCG8 | GWAS association (p=6.0e-41) | Large GWAS |
| rs2740488 | — | GWAS association (p=6.0e-41) | Large GWAS |
| rs55925606 | — | GWAS association (p=2.0e-40) | Large GWAS |
| rs635634 | — | GWAS association (p=1.0e-39) | Large GWAS |
| rs58542926 | TM6SF2 | GWAS association (p=1.0e-39) | Large GWAS |
| rs325 | LPL | GWAS association (p=2.0e-39) | Large GWAS |
| rs115849089 | — | GWAS association (p=6.0e-38) | Large GWAS |
| rs181948526 | — | GWAS association (p=2.0e-34) | Large GWAS |
| rs2519093 | ABO | GWAS association (p=2.0e-32) | Large GWAS |
| rs118170342 | — | GWAS association (p=1.0e-31) | Large GWAS |
| rs28601761 | — | GWAS association (p=9.0e-31) | Large GWAS |
| rs4307732 | — | GWAS association (p=9.0e-30) | Large GWAS |
| rs771193934 | — | GWAS association (p=2.0e-29) | Large GWAS |
| rs1260326 | GCKR | GWAS association (p=9.0e-29) | Large GWAS |
| rs73001065 | — | GWAS association (p=1.0e-28) | Large GWAS |
| rs557933 | — | GWAS association (p=4.0e-28) | Large GWAS |
| rs174574 | FADS2 | GWAS association (p=6.0e-26) | Large GWAS |
| rs117113213 | — | GWAS association (p=3.0e-25) | Large GWAS |
| rs484084 | — | GWAS association (p=5.0e-25) | Large GWAS |
| rs525028 | — | GWAS association (p=6.0e-25) | Large GWAS |
| rs34596921 | — | GWAS association (p=4.0e-24) | Large GWAS |
| rs653178 | ATXN2 | GWAS association (p=3.0e-22) | Large GWAS |
| rs34042070 | — | GWAS association (p=5.0e-22) | Large GWAS |
| rs115478735 | ABO | GWAS association (p=7.0e-22) | Large GWAS |
| rs4722551 | LOC105375199 | GWAS association (p=9.0e-22) | Large GWAS |
| rs6475606 | CDKN2B-AS1 | GWAS association (p=9.0e-22) | Large GWAS |
| rs115018790 | — | GWAS association (p=1.0e-21) | Large GWAS |
| rs7177289 | — | GWAS association (p=2.0e-21) | Large GWAS |
| rs6938647 | — | GWAS association (p=3.0e-21) | Large GWAS |
| rs6073958 | — | GWAS association (p=8.0e-21) | Large GWAS |
| rs7012814 | — | GWAS association (p=8.0e-21) | Large GWAS |
| rs4299376 | ABCG8 | GWAS association (p=2.0e-19) | Large GWAS |
| rs73066485 | — | GWAS association (p=3.0e-19) | Large GWAS |
| rs117793008 | — | GWAS association (p=7.0e-19) | Large GWAS |
| rs11086801 | — | GWAS association (p=8.0e-19) | Large GWAS |
| rs79598313 | — | GWAS association (p=1.0e-18) | Large GWAS |
| rs2305972 | — | GWAS association (p=1.0e-18) | Large GWAS |
| rs531501453 | — | GWAS association (p=1.0e-18) | Large GWAS |
| rs1461729 | LOC157273 | GWAS association (p=2.0e-18) | Large GWAS |
| rs55714927 | — | GWAS association (p=5.0e-18) | Large GWAS |
| rs704 | VTN | GWAS association (p=5.0e-18) | Large GWAS |
| rs35081008 | — | GWAS association (p=6.0e-18) | Large GWAS |
| rs2618566 | — | GWAS association (p=7.0e-18) | Large GWAS |
| rs77262773 | ABCA5 | GWAS association (p=2.0e-17) | Large GWAS |
| rs150169808 | — | GWAS association (p=2.0e-17) | Large GWAS |
| rs41279633 | — | GWAS association (p=3.0e-17) | Large GWAS |
| rs2070895 | LIPC | GWAS association (p=1.0e-16) | Large GWAS |
| rs77542162 | ABCA6 | GWAS association (p=1.0e-16) | Large GWAS |
| rs11621792 | — | GWAS association (p=1.0e-16) | Large GWAS |
| rs58198139 | — | GWAS association (p=3.0e-16) | Large GWAS |
| rs80254170 | — | GWAS association (p=5.0e-16) | Large GWAS |
| rs7773004 | — | GWAS association (p=6.0e-16) | Large GWAS |
| rs2043085 | — | GWAS association (p=9.0e-16) | Large GWAS |
| rs12150378 | — | GWAS association (p=1.0e-15) | Large GWAS |
| rs34562254 | TNFRSF13B | GWAS association (p=3.0e-15) | Large GWAS |
| rs11099097 | LOC124900725 | GWAS association (p=4.0e-15) | Large GWAS |
| rs12948394 | — | GWAS association (p=5.0e-15) | Large GWAS |
| rs9391858 | — | GWAS association (p=6.0e-15) | Large GWAS |
| rs149394327 | — | GWAS association (p=6.0e-15) | Large GWAS |
| rs1037117 | — | GWAS association (p=9.0e-15) | Large GWAS |
| rs7704457 | — | GWAS association (p=1.0e-14) | Large GWAS |
| rs1800961 | HNF4A | GWAS association (p=2.0e-14) | Large GWAS |
| rs4649085 | MACO1 | GWAS association (p=2.0e-14) | Large GWAS |
| rs472495 | PCSK9 | GWAS association (p=3.0e-14) | Large GWAS |
| rs2235215 | MYLIP | GWAS association (p=4.0e-14) | Large GWAS |
| rs6940814 | — | GWAS association (p=8.0e-14) | Large GWAS |
| rs13290734 | INPP5E | GWAS association (p=1.0e-13) | Large GWAS |
| rs7555577 | — | GWAS association (p=2.0e-13) | Large GWAS |
| rs4794048 | — | GWAS association (p=2.0e-13) | Large GWAS |
| rs116734477 | ITGA1 | GWAS association (p=2.0e-13) | Large GWAS |
| rs538711822 | — | GWAS association (p=2.0e-13) | Large GWAS |
| rs6920309 | — | GWAS association (p=2.0e-13) | Large GWAS |
| rs2437029 | — | GWAS association (p=4.0e-13) | Large GWAS |
| rs10750766 | — | GWAS association (p=4.0e-13) | Large GWAS |
| rs6876073 | — | GWAS association (p=4.0e-13) | Large GWAS |
| rs11206517 | — | GWAS association (p=6.0e-13) | Large GWAS |
Showing the top 100 of 140 variants by evidence strength.
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.