Trait
SNPs associated with cholesterol in large HDL measurement
283 genetic variants across 82 genes have been associated with cholesterol in large HDL measurement in published research. Key genes include ACP1, AGPAT5, AKT1.
Associated variants283 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs6073958 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs174564 | FADS2 | GWAS association (p=0.0e+00) | Large GWAS |
| rs183130 | CETP | GWAS association (p=0.0e+00) | Large GWAS |
| rs964184 | APOA5 | GWAS association (p=0.0e+00) | Large GWAS |
| rs261290 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs328 | LPL | GWAS association (p=0.0e+00) | Large GWAS |
| rs72836561 | — | GWAS association (p=2.0e-232) | Large GWAS |
| rs1601935 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs9989419 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs1800588 | LIPC | GWAS association (p=7.0e-198) | Large GWAS |
| rs55747707 | MLXIPL | GWAS association (p=2.0e-190) | Large GWAS |
| rs77960347 | LIPG | GWAS association (p=3.0e-142) | Large GWAS |
| rs921919 | SCARB1 | GWAS association (p=7.0e-140) | Large GWAS |
| rs676210 | APOB | GWAS association (p=7.0e-134) | Large GWAS |
| rs2980860 | — | GWAS association (p=3.0e-127) | Large GWAS |
| rs2943647 | — | GWAS association (p=8.0e-126) | Large GWAS |
| rs11122450 | — | GWAS association (p=3.0e-124) | Large GWAS |
| rs1260326 | GCKR | GWAS association (p=1.0e-123) | Large GWAS |
| rs998584 | POLR1C | GWAS association (p=9.0e-119) | Large GWAS |
| rs325 | LPL | GWAS association (p=4.0e-103) | Large GWAS |
| rs12443634 | — | GWAS association (p=4.0e-95) | Large GWAS |
| rs2925979 | CMIP | GWAS association (p=1.0e-93) | Large GWAS |
| rs41272086 | — | GWAS association (p=6.0e-82) | Large GWAS |
| rs174581 | FADS2 | GWAS association (p=1.0e-74) | Large GWAS |
| rs10184004 | — | GWAS association (p=1.0e-73) | Large GWAS |
| rs2740488 | — | GWAS association (p=6.0e-73) | Large GWAS |
| rs13107325 | SLC39A8 | GWAS association (p=1.0e-69) | Large GWAS |
| rs117760119 | — | GWAS association (p=4.0e-68) | Large GWAS |
| rs2068888 | — | GWAS association (p=5.0e-68) | Large GWAS |
| rs686030 | TTC39B | GWAS association (p=3.0e-67) | Large GWAS |
| rs4986970 | LCAT | GWAS association (p=1.0e-66) | Large GWAS |
| rs61805075 | — | GWAS association (p=2.0e-65) | Large GWAS |
| rs4918722 | GPAM | GWAS association (p=2.0e-65) | Large GWAS |
| rs9769088 | CYP2W1 | GWAS association (p=7.0e-60) | Large GWAS |
| rs7012637 | — | GWAS association (p=4.0e-58) | Large GWAS |
| rs112771035 | — | GWAS association (p=2.0e-57) | Large GWAS |
| rs881844 | STARD3 | GWAS association (p=4.0e-57) | Large GWAS |
| rs11644601 | — | GWAS association (p=1.0e-56) | Large GWAS |
| rs7296044 | MVK | GWAS association (p=6.0e-55) | Large GWAS |
| rs13271228 | — | GWAS association (p=3.0e-54) | Large GWAS |
| rs72959041 | — | GWAS association (p=1.0e-49) | Large GWAS |
| rs71468663 | — | GWAS association (p=2.0e-49) | Large GWAS |
| rs4660808 | — | GWAS association (p=8.0e-49) | Large GWAS |
| rs79600951 | NUP93 | GWAS association (p=9.0e-48) | Large GWAS |
| rs116843064 | ANGPTL4 | GWAS association (p=7.0e-47) | Large GWAS |
| rs150844304 | — | GWAS association (p=6.0e-46) | Large GWAS |
| rs78058190 | — | GWAS association (p=6.0e-45) | Large GWAS |
| rs705379 | PON1 | GWAS association (p=8.0e-44) | Large GWAS |
| rs3760782 | DOCK6 | GWAS association (p=1.0e-43) | Large GWAS |
| rs12496730 | — | GWAS association (p=2.0e-42) | Large GWAS |
| rs147278638 | — | GWAS association (p=1.0e-40) | Large GWAS |
| rs34265539 | — | GWAS association (p=1.0e-39) | Large GWAS |
| rs58542926 | TM6SF2 | GWAS association (p=5.0e-39) | Large GWAS |
| rs61352607 | INHBC | GWAS association (p=7.0e-39) | Large GWAS |
| rs111514504 | — | GWAS association (p=2.0e-38) | Large GWAS |
| rs634869 | — | GWAS association (p=2.0e-37) | Large GWAS |
| rs4650999 | — | GWAS association (p=2.0e-37) | Large GWAS |
| rs77243579 | CCDC162P | GWAS association (p=6.0e-37) | Large GWAS |
| rs778801698 | — | GWAS association (p=7.0e-36) | Large GWAS |
| rs72823013 | LOC105378493 | GWAS association (p=3.0e-35) | Large GWAS |
| rs2642438 | MTARC1 | GWAS association (p=5.0e-35) | Large GWAS |
| rs7134375 | LOC105369688 | GWAS association (p=6.0e-35) | Large GWAS |
| rs59104589 | — | GWAS association (p=1.0e-34) | Large GWAS |
| rs2745352 | RSPO3 | GWAS association (p=1.0e-34) | Large GWAS |
| rs673548 | APOB | GWAS association (p=2.0e-34) | Large GWAS |
| rs13108218 | — | GWAS association (p=9.0e-34) | Large GWAS |
| rs6532796 | — | GWAS association (p=1.0e-33) | Large GWAS |
| rs3184504 | SH2B3 | GWAS association (p=1.0e-33) | Large GWAS |
| rs10162642 | — | GWAS association (p=5.0e-33) | Large GWAS |
| rs114165349 | — | GWAS association (p=6.0e-32) | Large GWAS |
| rs10012624 | FAM13A | GWAS association (p=8.0e-32) | Large GWAS |
| rs34154818 | — | GWAS association (p=2.0e-31) | Large GWAS |
| rs13137144 | DGKQ | GWAS association (p=4.0e-31) | Large GWAS |
| rs34062580 | MLXIPL | GWAS association (p=7.0e-31) | Large GWAS |
| rs11060344 | HIP1R | GWAS association (p=2.0e-30) | Large GWAS |
| rs3775228 | — | GWAS association (p=3.0e-30) | Large GWAS |
| rs1635852 | JAZF1 | GWAS association (p=5.0e-30) | Large GWAS |
| rs333947 | — | GWAS association (p=6.0e-30) | Large GWAS |
| rs4234589 | — | GWAS association (p=5.0e-29) | Large GWAS |
| rs6800707 | NISCH | GWAS association (p=1.0e-28) | Large GWAS |
| rs17036170 | PPARG | GWAS association (p=1.0e-28) | Large GWAS |
| rs62271373 | — | GWAS association (p=3.0e-28) | Large GWAS |
| rs58574748 | — | GWAS association (p=5.0e-28) | Large GWAS |
| rs1623060 | — | GWAS association (p=2.0e-27) | Large GWAS |
| rs5754422 | — | GWAS association (p=2.0e-26) | Large GWAS |
| rs9375188 | — | GWAS association (p=6.0e-26) | Large GWAS |
| rs781006834 | — | GWAS association (p=9.0e-26) | Large GWAS |
| rs4913534 | — | GWAS association (p=6.0e-25) | Large GWAS |
| rs34712774 | — | GWAS association (p=2.0e-24) | Large GWAS |
| rs58301047 | GPIHBP1 | GWAS association (p=5.0e-24) | Large GWAS |
| rs62102718 | — | GWAS association (p=6.0e-24) | Large GWAS |
| rs2289863 | — | GWAS association (p=6.0e-24) | Large GWAS |
| rs1365297 | — | GWAS association (p=6.0e-24) | Large GWAS |
| rs2267373 | — | GWAS association (p=9.0e-24) | Large GWAS |
| rs718700 | — | GWAS association (p=5.0e-23) | Large GWAS |
| rs2943648 | — | GWAS association (p=5.0e-23) | Large GWAS |
| rs2954029 | — | GWAS association (p=5.0e-23) | Large GWAS |
| rs4969143 | — | GWAS association (p=6.0e-23) | Large GWAS |
| rs2307111 | POC5 | GWAS association (p=8.0e-23) | Large GWAS |
| rs8126001 | — | GWAS association (p=1.0e-22) | Large GWAS |
Showing the top 100 of 283 variants by evidence strength.
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.