Trait
SNPs associated with free cholesterol in HDL measurement
212 genetic variants across 70 genes have been associated with free cholesterol in HDL measurement in published research. Key genes include ABCA1, ADCY5, AFF3.
Associated variants212 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs261290 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs15285 | LPL | GWAS association (p=0.0e+00) | Large GWAS |
| rs174564 | FADS2 | GWAS association (p=0.0e+00) | Large GWAS |
| rs183130 | CETP | GWAS association (p=0.0e+00) | Large GWAS |
| rs77960347 | LIPG | GWAS association (p=6.0e-269) | Large GWAS |
| rs72836561 | — | GWAS association (p=8.0e-201) | Large GWAS |
| rs1601935 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs1077835 | LIPC | GWAS association (p=1.0e-200) | Large GWAS |
| rs72786786 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs673548 | APOB | GWAS association (p=1.0e-147) | Large GWAS |
| rs2281719 | — | GWAS association (p=2.0e-144) | Large GWAS |
| rs2740488 | — | GWAS association (p=2.0e-126) | Large GWAS |
| rs921919 | SCARB1 | GWAS association (p=1.0e-123) | Large GWAS |
| rs12721030 | — | GWAS association (p=9.0e-112) | Large GWAS |
| rs7412 | APOE | GWAS association (p=6.0e-104) | Large GWAS |
| rs9987289 | LOC157273 | GWAS association (p=2.0e-103) | Large GWAS |
| rs686030 | TTC39B | GWAS association (p=3.0e-100) | Large GWAS |
| rs737338 | DOCK6 | GWAS association (p=2.0e-98) | Large GWAS |
| rs75627662 | — | GWAS association (p=2.0e-84) | Large GWAS |
| rs2792751 | GPAM | GWAS association (p=1.0e-83) | Large GWAS |
| rs325 | LPL | GWAS association (p=2.0e-79) | Large GWAS |
| rs13107325 | SLC39A8 | GWAS association (p=1.0e-76) | Large GWAS |
| rs6073958 | — | GWAS association (p=8.0e-69) | Large GWAS |
| rs2925979 | CMIP | GWAS association (p=5.0e-67) | Large GWAS |
| rs102275 | TMEM258 | GWAS association (p=3.0e-66) | Large GWAS |
| rs4986970 | LCAT | GWAS association (p=1.0e-65) | Large GWAS |
| rs13271228 | — | GWAS association (p=5.0e-64) | Large GWAS |
| rs998584 | POLR1C | GWAS association (p=2.0e-58) | Large GWAS |
| rs144023941 | — | GWAS association (p=8.0e-58) | Large GWAS |
| rs2966092 | — | GWAS association (p=6.0e-57) | Large GWAS |
| rs9769088 | CYP2W1 | GWAS association (p=5.0e-54) | Large GWAS |
| rs2642438 | MTARC1 | GWAS association (p=6.0e-53) | Large GWAS |
| rs79366941 | — | GWAS association (p=1.0e-51) | Large GWAS |
| rs147278638 | — | GWAS association (p=1.0e-48) | Large GWAS |
| rs3768321 | — | GWAS association (p=4.0e-48) | Large GWAS |
| rs881844 | STARD3 | GWAS association (p=8.0e-48) | Large GWAS |
| rs7241918 | LOC105372112 | GWAS association (p=1.0e-46) | Large GWAS |
| rs11644601 | — | GWAS association (p=2.0e-43) | Large GWAS |
| rs35057928 | LOC105375508 | GWAS association (p=4.0e-43) | Large GWAS |
| rs3184504 | SH2B3 | GWAS association (p=7.0e-43) | Large GWAS |
| rs61805075 | — | GWAS association (p=9.0e-43) | Large GWAS |
| rs181363 | UBE2L3 | GWAS association (p=2.0e-42) | Large GWAS |
| rs10889356 | DOCK7 | GWAS association (p=3.0e-42) | Large GWAS |
| rs41272086 | — | GWAS association (p=1.0e-40) | Large GWAS |
| rs10162642 | — | GWAS association (p=2.0e-38) | Large GWAS |
| rs34168560 | TMPRSS11E | GWAS association (p=3.0e-38) | Large GWAS |
| rs4239651 | — | GWAS association (p=5.0e-38) | Large GWAS |
| rs62466318 | — | GWAS association (p=3.0e-37) | Large GWAS |
| rs4650998 | LOC105371632 | GWAS association (p=3.0e-37) | Large GWAS |
| rs75265117 | COBLL1 | GWAS association (p=8.0e-37) | Large GWAS |
| rs116843064 | ANGPTL4 | GWAS association (p=2.0e-35) | Large GWAS |
| rs676210 | APOB | GWAS association (p=2.0e-34) | Large GWAS |
| rs7970695 | HNF1A | GWAS association (p=3.0e-34) | Large GWAS |
| rs778801698 | — | GWAS association (p=1.0e-33) | Large GWAS |
| rs4860974 | — | GWAS association (p=5.0e-33) | Large GWAS |
| rs78058190 | — | GWAS association (p=1.0e-32) | Large GWAS |
| rs112771035 | — | GWAS association (p=2.0e-32) | Large GWAS |
| rs11228871 | — | GWAS association (p=4.0e-32) | Large GWAS |
| rs4240624 | LOC157273 | GWAS association (p=9.0e-32) | Large GWAS |
| rs58301047 | GPIHBP1 | GWAS association (p=4.0e-30) | Large GWAS |
| rs705379 | PON1 | GWAS association (p=6.0e-30) | Large GWAS |
| rs75911530 | — | GWAS association (p=1.0e-29) | Large GWAS |
| rs2494748 | AKT1 | GWAS association (p=1.0e-29) | Large GWAS |
| rs4969143 | — | GWAS association (p=1.0e-29) | Large GWAS |
| rs56271783 | — | GWAS association (p=2.0e-28) | Large GWAS |
| rs10242866 | — | GWAS association (p=5.0e-28) | Large GWAS |
| rs77243579 | CCDC162P | GWAS association (p=7.0e-28) | Large GWAS |
| rs72959041 | — | GWAS association (p=9.0e-28) | Large GWAS |
| rs80080062 | ETV5 | GWAS association (p=2.0e-27) | Large GWAS |
| rs625145 | SIK3 | GWAS association (p=8.0e-27) | Large GWAS |
| rs333947 | — | GWAS association (p=1.0e-26) | Large GWAS |
| rs507562 | — | GWAS association (p=1.0e-24) | Large GWAS |
| rs193084249 | — | GWAS association (p=7.0e-24) | Large GWAS |
| rs3825061 | VPS11 | GWAS association (p=1.0e-23) | Large GWAS |
| rs11045171 | — | GWAS association (p=2.0e-23) | Large GWAS |
| rs6567160 | — | GWAS association (p=3.0e-23) | Large GWAS |
| rs235314 | — | GWAS association (p=4.0e-23) | Large GWAS |
| rs3798233 | — | GWAS association (p=4.0e-23) | Large GWAS |
| rs13137144 | DGKQ | GWAS association (p=5.0e-23) | Large GWAS |
| rs5167 | — | GWAS association (p=1.0e-22) | Large GWAS |
| rs560552975 | — | GWAS association (p=2.0e-22) | Large GWAS |
| rs34421596 | — | GWAS association (p=2.0e-22) | Large GWAS |
| rs2055975 | — | GWAS association (p=7.0e-22) | Large GWAS |
| rs2792735 | — | GWAS association (p=9.0e-22) | Large GWAS |
| rs11122454 | GALNT2 | GWAS association (p=2.0e-21) | Large GWAS |
| rs1708302 | JAZF1 | GWAS association (p=4.0e-21) | Large GWAS |
| rs1215112 | — | GWAS association (p=1.0e-20) | Large GWAS |
| rs72823013 | LOC105378493 | GWAS association (p=2.0e-20) | Large GWAS |
| rs9884482 | — | GWAS association (p=2.0e-20) | Large GWAS |
| rs112001035 | LOC105371874 | GWAS association (p=2.0e-20) | Large GWAS |
| rs559355 | — | GWAS association (p=5.0e-20) | Large GWAS |
| rs1645788 | — | GWAS association (p=6.0e-20) | Large GWAS |
| rs7599 | — | GWAS association (p=1.0e-19) | Large GWAS |
| rs635769 | — | GWAS association (p=1.0e-19) | Large GWAS |
| rs6601924 | AKR1C4 | GWAS association (p=1.0e-19) | Large GWAS |
| rs553427 | — | GWAS association (p=1.0e-19) | Large GWAS |
| rs59104589 | — | GWAS association (p=2.0e-19) | Large GWAS |
| rs754648695 | — | GWAS association (p=3.0e-19) | Large GWAS |
| rs4871603 | — | GWAS association (p=3.0e-19) | Large GWAS |
| rs2307111 | POC5 | GWAS association (p=3.0e-19) | Large GWAS |
Showing the top 100 of 212 variants by evidence strength.
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.