Trait
SNPs associated with Orofacial cleft
28 genetic variants across 13 genes have been associated with Orofacial cleft in published research. Key genes include ABCA4, IRF6, LINC00976.
Associated variants28 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs72728755 | — | GWAS association (p=3.0e-29) | Large GWAS |
| rs17242358 | — | GWAS association (p=3.0e-23) | Large GWAS |
| rs72728734 | — | GWAS association (p=7.0e-15) | Large GWAS |
| rs55658222 | LINC00976 | GWAS association (p=4.0e-14) | Large GWAS |
| rs11119345 | TRAF3IP3 | GWAS association (p=3.0e-13) | Large GWAS |
| rs861020 | IRF6 | GWAS association (p=3.0e-12) | Large GWAS |
| rs9439714 | — | GWAS association (p=4.0e-12) | Large GWAS |
| rs7870795 | — | GWAS association (p=4.0e-11) | Large GWAS |
| rs6745357 | — | GWAS association (p=4.0e-10) | Large GWAS |
| rs16957821 | NTN1 | GWAS association (p=9.0e-10) | Large GWAS |
| rs13385292 | — | GWAS association (p=9.0e-10) | Large GWAS |
| rs4112328 | — | GWAS association (p=4.0e-09) | Large GWAS |
| rs13041247 | LOC102724968 | GWAS association (p=6.0e-09) | Large GWAS |
| rs2600519 | — | GWAS association (p=6.0e-09) | Large GWAS |
| rs742071 | PAX7 | GWAS association (p=7.0e-09) | Large GWAS |
| rs28361060 | TSBP1 | GWAS association (p=8.0e-09) | Large GWAS |
| rs79482068 | TP63 | GWAS association (p=9.0e-09) | Large GWAS |
| rs7590268 | THADA | GWAS association (p=1.0e-08) | Large GWAS |
| rs1588366 | TANC2 | GWAS association (p=1.0e-08) | Large GWAS |
| rs7406226 | NTN1 | GWAS association (p=1.0e-08) | Large GWAS |
| rs12543318 | — | GWAS association (p=2.0e-08) | Large GWAS |
| rs227731 | — | GWAS association (p=2.0e-08) | Large GWAS |
| rs1975866 | RBFOX3 | GWAS association (p=3.0e-08) | Large GWAS |
| rs7632427 | — | GWAS association (p=4.0e-08) | Large GWAS |
| rs8001641 | — | GWAS association (p=9.0e-11) | Large GWAS |
| rs560426 | ABCA4 | GWAS association (p=3.0e-12) | Large GWAS |
| rs7078160 | SHTN1 | GWAS association (p=4.0e-11) | Large GWAS |
| rs987525 | — | GWAS association (p=5.0e-35) | Large GWAS |
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.