Trait

SNPs associated with Autism Spectrum Disorder, Schizophrenia

159 genetic variants across 27 genes have been associated with Autism Spectrum Disorder, Schizophrenia in published research. Key genes include ATP2B2, BTN2A1, BTN3A1.

Associated variants159 total

rsidGeneEffectEvidence
rs115329265—GWAS association (p=2.0e-27)Meta-analysis
rs116137698—GWAS association (p=3.0e-26)Meta-analysis
rs141342723—GWAS association (p=4.0e-24)Meta-analysis
rs75782365BTN3A1GWAS association (p=8.0e-24)Meta-analysis
rs151267808—GWAS association (p=1.0e-22)Meta-analysis
rs1782810MIR137HGGWAS association (p=1.0e-19)Meta-analysis
rs6921919—GWAS association (p=1.0e-19)Meta-analysis
rs9467711LOC101928743GWAS association (p=3.0e-19)Meta-analysis
rs116326873—GWAS association (p=2.0e-17)Meta-analysis
rs116408368—GWAS association (p=7.0e-17)Meta-analysis
rs115242751—GWAS association (p=1.0e-16)Meta-analysis
rs116385615—GWAS association (p=2.0e-16)Meta-analysis
rs114882497—GWAS association (p=2.0e-16)Meta-analysis
rs114867672—GWAS association (p=2.0e-16)Meta-analysis
rs202906—GWAS association (p=3.0e-16)Meta-analysis
rs13212562—GWAS association (p=3.0e-16)Meta-analysis
rs59574136MAD1L1GWAS association (p=7.0e-16)Meta-analysis
rs6940116—GWAS association (p=2.0e-15)Meta-analysis
rs116663187—GWAS association (p=2.0e-15)Meta-analysis
rs9269271—GWAS association (p=4.0e-15)Meta-analysis
rs140502984—GWAS association (p=5.0e-15)Meta-analysis
rs115035678—GWAS association (p=1.0e-14)Meta-analysis
rs9274390—GWAS association (p=2.0e-14)Meta-analysis
rs115344853—GWAS association (p=4.0e-14)Meta-analysis
rs1024582—GWAS association (p=8.0e-14)Meta-analysis
rs115625073—GWAS association (p=9.0e-14)Meta-analysis
rs61472021—GWAS association (p=1.0e-13)Meta-analysis
rs184153866—GWAS association (p=2.0e-13)Meta-analysis
rs115558405—GWAS association (p=2.0e-13)Meta-analysis
rs150430679—GWAS association (p=3.0e-13)Meta-analysis
rs138984909—GWAS association (p=4.0e-13)Meta-analysis
rs911186—GWAS association (p=5.0e-13)Meta-analysis
rs144304366—GWAS association (p=5.0e-13)Meta-analysis
rs13218591—GWAS association (p=6.0e-13)Meta-analysis
rs114455101—GWAS association (p=6.0e-13)Meta-analysis
rs185717927—GWAS association (p=7.0e-13)Meta-analysis
rs138748649—GWAS association (p=1.0e-12)Meta-analysis
rs142972412—GWAS association (p=1.0e-12)Meta-analysis
rs4129585TSNARE1GWAS association (p=2.0e-12)Meta-analysis
rs12887734COA8GWAS association (p=2.0e-12)Meta-analysis
rs36057735—GWAS association (p=2.0e-12)Meta-analysis
rs115052633—GWAS association (p=2.0e-12)Meta-analysis
rs186129480—GWAS association (p=2.0e-12)Meta-analysis
rs2507989HLA-BGWAS association (p=2.0e-12)Meta-analysis
rs115937317—GWAS association (p=3.0e-12)Meta-analysis
rs144018888—GWAS association (p=3.0e-12)Meta-analysis
rs114274203—GWAS association (p=3.0e-12)Meta-analysis
rs281768MAIP1GWAS association (p=3.0e-12)Meta-analysis
rs707939—GWAS association (p=4.0e-12)Meta-analysis
rs186229361—GWAS association (p=5.0e-12)Meta-analysis
rs9461856—GWAS association (p=6.0e-12)Meta-analysis
rs113397282HLA-DRB5GWAS association (p=6.0e-12)Meta-analysis
rs113205291—GWAS association (p=7.0e-12)Meta-analysis
rs142790902—GWAS association (p=1.0e-11)Meta-analysis
rs75968099—GWAS association (p=1.0e-11)Meta-analysis
rs115661163—GWAS association (p=1.0e-11)Meta-analysis
rs111312615—GWAS association (p=1.0e-11)Meta-analysis
rs13240464—GWAS association (p=2.0e-11)Meta-analysis
rs4713071—GWAS association (p=3.0e-11)Meta-analysis
rs11753207HLA-DRB1GWAS association (p=3.0e-11)Meta-analysis
rs191843781HLA-DRB5GWAS association (p=3.0e-11)Meta-analysis
rs116182620—GWAS association (p=3.0e-11)Meta-analysis
rs116067082—GWAS association (p=4.0e-11)Meta-analysis
rs142601889—GWAS association (p=4.0e-11)Meta-analysis
rs147976543—GWAS association (p=4.0e-11)Meta-analysis
rs116254153—GWAS association (p=4.0e-11)Meta-analysis
rs41563—GWAS association (p=5.0e-11)Meta-analysis
rs764284—GWAS association (p=6.0e-11)Meta-analysis
rs115325719—GWAS association (p=6.0e-11)Meta-analysis
rs17843707—GWAS association (p=7.0e-11)Meta-analysis
rs1150688—GWAS association (p=8.0e-11)Meta-analysis
rs189600472HLA-DRB5GWAS association (p=8.0e-11)Meta-analysis
rs4642619—GWAS association (p=1.0e-10)Meta-analysis
rs2176546—GWAS association (p=1.0e-10)Meta-analysis
rs149787317—GWAS association (p=1.0e-10)Meta-analysis
rs12925872—GWAS association (p=2.0e-10)Meta-analysis
rs116460775—GWAS association (p=2.0e-10)Meta-analysis
rs114838832—GWAS association (p=2.0e-10)Meta-analysis
rs4580973SRPK2GWAS association (p=3.0e-10)Meta-analysis
rs147875011—GWAS association (p=3.0e-10)Meta-analysis
rs7893279CACNB2GWAS association (p=3.0e-10)Meta-analysis
rs67756423—GWAS association (p=4.0e-10)Meta-analysis
rs1498232—GWAS association (p=5.0e-10)Meta-analysis
rs8042374CHRNA3GWAS association (p=5.0e-10)Meta-analysis
rs142520578—GWAS association (p=5.0e-10)Meta-analysis
rs114771361—GWAS association (p=5.0e-10)Meta-analysis
rs114810457—GWAS association (p=5.0e-10)Meta-analysis
rs17194490—GWAS association (p=5.0e-10)Meta-analysis
rs145470632—GWAS association (p=5.0e-10)Meta-analysis
rs3735025—GWAS association (p=6.0e-10)Meta-analysis
rs115283957—GWAS association (p=6.0e-10)Meta-analysis
rs4523957SMG6GWAS association (p=7.0e-10)Meta-analysis
rs7907645—GWAS association (p=9.0e-10)Meta-analysis
rs9270074HLA-DRB1GWAS association (p=1.0e-09)Meta-analysis
rs11874716—GWAS association (p=1.0e-09)Meta-analysis
rs72761442—GWAS association (p=1.0e-09)Meta-analysis
rs3132556—GWAS association (p=1.0e-09)Meta-analysis
rs116139966—GWAS association (p=1.0e-09)Meta-analysis
rs28724212HLA-DRB1GWAS association (p=1.0e-09)Meta-analysis
rs139547629HLA-DRB5GWAS association (p=1.0e-09)Meta-analysis

Showing the top 100 of 159 variants by evidence strength.

Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.

Autism Spectrum Disorder, Schizophrenia — SNPs & genetic associations — Gene Wizard