Trait
SNPs associated with cholesterol to total lipids in large HDL percentage
261 genetic variants across 81 genes have been associated with cholesterol to total lipids in large HDL percentage in published research. Key genes include ABO, AHR, ANGPTL4.
Associated variants261 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs964184 | APOA5 | GWAS association (p=0.0e+00) | Large GWAS |
| rs1260326 | GCKR | GWAS association (p=0.0e+00) | Large GWAS |
| rs6073958 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs328 | LPL | GWAS association (p=0.0e+00) | Large GWAS |
| rs1065853 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs183130 | CETP | GWAS association (p=0.0e+00) | Large GWAS |
| rs28601761 | — | GWAS association (p=1.0e-292) | Large GWAS |
| rs35493868 | — | GWAS association (p=1.0e-272) | Large GWAS |
| rs174564 | FADS2 | GWAS association (p=1.0e-227) | Large GWAS |
| rs72786786 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs7412 | APOE | GWAS association (p=1.0e-200) | Large GWAS |
| rs1057208 | PCIF1 | GWAS association (p=6.0e-188) | Large GWAS |
| rs79439217 | — | GWAS association (p=7.0e-179) | Large GWAS |
| rs72836561 | — | GWAS association (p=2.0e-133) | Large GWAS |
| rs1515100 | — | GWAS association (p=9.0e-107) | Large GWAS |
| rs998584 | POLR1C | GWAS association (p=3.0e-106) | Large GWAS |
| rs139974673 | — | GWAS association (p=2.0e-105) | Large GWAS |
| rs41272086 | — | GWAS association (p=5.0e-103) | Large GWAS |
| rs12740374 | CELSR2 | GWAS association (p=4.0e-101) | Large GWAS |
| rs325 | LPL | GWAS association (p=6.0e-94) | Large GWAS |
| rs2068888 | — | GWAS association (p=1.0e-72) | Large GWAS |
| rs11429307 | — | GWAS association (p=7.0e-72) | Large GWAS |
| rs35363532 | — | GWAS association (p=9.0e-68) | Large GWAS |
| rs13389219 | COBLL1 | GWAS association (p=4.0e-67) | Large GWAS |
| rs3775228 | — | GWAS association (p=6.0e-57) | Large GWAS |
| rs58542926 | TM6SF2 | GWAS association (p=8.0e-54) | Large GWAS |
| rs4986970 | LCAT | GWAS association (p=2.0e-53) | Large GWAS |
| rs13234131 | MLXIPL | GWAS association (p=3.0e-53) | Large GWAS |
| rs4921915 | — | GWAS association (p=5.0e-53) | Large GWAS |
| rs7133378 | — | GWAS association (p=6.0e-53) | Large GWAS |
| rs117760119 | — | GWAS association (p=2.0e-51) | Large GWAS |
| rs7310615 | SH2B3 | GWAS association (p=7.0e-49) | Large GWAS |
| rs174584 | — | GWAS association (p=1.0e-48) | Large GWAS |
| rs116843064 | ANGPTL4 | GWAS association (p=2.0e-47) | Large GWAS |
| rs9378248 | HLA-B | GWAS association (p=1.0e-44) | Large GWAS |
| rs2307111 | POC5 | GWAS association (p=1.0e-44) | Large GWAS |
| rs4371387 | — | GWAS association (p=9.0e-43) | Large GWAS |
| rs71468663 | — | GWAS association (p=8.0e-42) | Large GWAS |
| rs3768321 | — | GWAS association (p=6.0e-41) | Large GWAS |
| rs7012814 | — | GWAS association (p=4.0e-40) | Large GWAS |
| rs78058190 | — | GWAS association (p=1.0e-39) | Large GWAS |
| rs632057 | — | GWAS association (p=1.0e-39) | Large GWAS |
| rs72959041 | — | GWAS association (p=2.0e-39) | Large GWAS |
| rs13108218 | — | GWAS association (p=5.0e-36) | Large GWAS |
| rs11164916 | — | GWAS association (p=1.0e-35) | Large GWAS |
| rs11207994 | DOCK7 | GWAS association (p=3.0e-34) | Large GWAS |
| rs4656292 | — | GWAS association (p=4.0e-34) | Large GWAS |
| rs62271373 | — | GWAS association (p=5.0e-34) | Large GWAS |
| rs11658786 | STARD3 | GWAS association (p=1.0e-32) | Large GWAS |
| rs34154818 | — | GWAS association (p=1.0e-32) | Large GWAS |
| rs17447211 | — | GWAS association (p=2.0e-32) | Large GWAS |
| rs140628616 | — | GWAS association (p=1.0e-30) | Large GWAS |
| rs7134375 | LOC105369688 | GWAS association (p=3.0e-30) | Large GWAS |
| rs8126001 | — | GWAS association (p=6.0e-30) | Large GWAS |
| rs6800707 | NISCH | GWAS association (p=9.0e-30) | Large GWAS |
| rs563297725 | — | GWAS association (p=1.0e-28) | Large GWAS |
| rs13107325 | SLC39A8 | GWAS association (p=2.0e-28) | Large GWAS |
| rs367070 | — | GWAS association (p=3.0e-28) | Large GWAS |
| rs528118788 | — | GWAS association (p=1.0e-27) | Large GWAS |
| rs571848809 | LPA | GWAS association (p=5.0e-27) | Large GWAS |
| rs296886 | HNRNPK | GWAS association (p=6.0e-27) | Large GWAS |
| rs1106766 | R3HDM2 | GWAS association (p=9.0e-27) | Large GWAS |
| rs11927405 | — | GWAS association (p=1.0e-26) | Large GWAS |
| rs11644601 | — | GWAS association (p=2.0e-26) | Large GWAS |
| rs11118310 | — | GWAS association (p=3.0e-25) | Large GWAS |
| rs10012624 | FAM13A | GWAS association (p=5.0e-25) | Large GWAS |
| rs17036170 | PPARG | GWAS association (p=5.0e-24) | Large GWAS |
| rs72823013 | LOC105378493 | GWAS association (p=9.0e-24) | Large GWAS |
| rs4976033 | — | GWAS association (p=3.0e-23) | Large GWAS |
| rs1883711 | — | GWAS association (p=3.0e-23) | Large GWAS |
| rs704 | VTN | GWAS association (p=8.0e-23) | Large GWAS |
| rs12814794 | — | GWAS association (p=2.0e-22) | Large GWAS |
| rs11688682 | — | GWAS association (p=3.0e-22) | Large GWAS |
| rs62102718 | — | GWAS association (p=5.0e-22) | Large GWAS |
| rs11060344 | HIP1R | GWAS association (p=5.0e-22) | Large GWAS |
| rs150844304 | — | GWAS association (p=9.0e-22) | Large GWAS |
| rs13101828 | — | GWAS association (p=1.0e-21) | Large GWAS |
| rs771193934 | — | GWAS association (p=2.0e-21) | Large GWAS |
| rs2289863 | — | GWAS association (p=5.0e-21) | Large GWAS |
| rs1128249 | — | GWAS association (p=6.0e-21) | Large GWAS |
| rs4410790 | AHR | GWAS association (p=3.0e-20) | Large GWAS |
| rs3936510 | — | GWAS association (p=4.0e-20) | Large GWAS |
| rs11030107 | BDNF | GWAS association (p=7.0e-20) | Large GWAS |
| rs77050717 | — | GWAS association (p=8.0e-20) | Large GWAS |
| rs200115642 | — | GWAS association (p=9.0e-20) | Large GWAS |
| rs11770163 | — | GWAS association (p=9.0e-20) | Large GWAS |
| rs780436381 | — | GWAS association (p=1.0e-19) | Large GWAS |
| rs884366 | — | GWAS association (p=1.0e-19) | Large GWAS |
| rs7924036 | — | GWAS association (p=2.0e-19) | Large GWAS |
| rs1045242 | TNFAIP8 | GWAS association (p=2.0e-19) | Large GWAS |
| rs11122450 | — | GWAS association (p=2.0e-19) | Large GWAS |
| rs113135335 | BCL2L11 | GWAS association (p=4.0e-19) | Large GWAS |
| rs11650182 | SKAP1 | GWAS association (p=4.0e-19) | Large GWAS |
| rs4909945 | IRAG1 | GWAS association (p=6.0e-19) | Large GWAS |
| rs2267373 | — | GWAS association (p=6.0e-19) | Large GWAS |
| rs4969143 | — | GWAS association (p=8.0e-19) | Large GWAS |
| rs73632723 | — | GWAS association (p=1.0e-18) | Large GWAS |
| rs4711750 | — | GWAS association (p=1.0e-18) | Large GWAS |
| rs79598313 | — | GWAS association (p=2.0e-18) | Large GWAS |
| rs4272525 | — | GWAS association (p=2.0e-18) | Large GWAS |
Showing the top 100 of 261 variants by evidence strength.
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.