Trait
SNPs associated with cholesterol in small HDL measurement
151 genetic variants across 49 genes have been associated with cholesterol in small HDL measurement in published research. Key genes include ABCA1, ABO, ADAR.
Associated variants151 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs1260326 | GCKR | GWAS association (p=0.0e+00) | Large GWAS |
| rs139953093 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs2070895 | LIPC | GWAS association (p=1.0e-283) | Large GWAS |
| rs4240624 | LOC157273 | GWAS association (p=4.0e-240) | Large GWAS |
| rs613808 | APOA1-AS | GWAS association (p=1.0e-221) | Large GWAS |
| rs58952297 | — | GWAS association (p=4.0e-184) | Large GWAS |
| rs8045855 | CETP | GWAS association (p=6.0e-172) | Large GWAS |
| rs821840 | CETP | GWAS association (p=3.0e-171) | Large GWAS |
| rs4656292 | — | GWAS association (p=4.0e-123) | Large GWAS |
| rs15285 | LPL | GWAS association (p=8.0e-119) | Large GWAS |
| rs9304381 | LOC105372112 | GWAS association (p=2.0e-116) | Large GWAS |
| rs1168086 | DOCK7 | GWAS association (p=1.0e-108) | Large GWAS |
| rs782470771 | — | GWAS association (p=8.0e-107) | Large GWAS |
| rs58542926 | TM6SF2 | GWAS association (p=7.0e-106) | Large GWAS |
| rs7841189 | — | GWAS association (p=1.0e-105) | Large GWAS |
| rs2519093 | ABO | GWAS association (p=4.0e-101) | Large GWAS |
| rs7412 | APOE | GWAS association (p=7.0e-95) | Large GWAS |
| rs600518 | — | GWAS association (p=4.0e-82) | Large GWAS |
| rs78132593 | — | GWAS association (p=1.0e-78) | Large GWAS |
| rs737338 | DOCK6 | GWAS association (p=1.0e-64) | Large GWAS |
| rs112875651 | — | GWAS association (p=3.0e-64) | Large GWAS |
| rs13108218 | — | GWAS association (p=6.0e-63) | Large GWAS |
| rs55714927 | — | GWAS association (p=4.0e-60) | Large GWAS |
| rs111841857 | — | GWAS association (p=7.0e-55) | Large GWAS |
| rs72836561 | — | GWAS association (p=4.0e-54) | Large GWAS |
| rs140584594 | GSTM1 | GWAS association (p=2.0e-51) | Large GWAS |
| rs4969142 | PGS1 | GWAS association (p=3.0e-50) | Large GWAS |
| rs10935473 | — | GWAS association (p=9.0e-49) | Large GWAS |
| rs56776911 | — | GWAS association (p=2.0e-41) | Large GWAS |
| rs964184 | APOA5 | GWAS association (p=8.0e-41) | Large GWAS |
| rs645040 | — | GWAS association (p=3.0e-39) | Large GWAS |
| rs738409 | PNPLA3 | GWAS association (p=1.0e-37) | Large GWAS |
| rs4665710 | — | GWAS association (p=3.0e-37) | Large GWAS |
| rs4841132 | LOC157273 | GWAS association (p=4.0e-37) | Large GWAS |
| rs181362 | UBE2L3 | GWAS association (p=2.0e-33) | Large GWAS |
| rs174418 | — | GWAS association (p=4.0e-32) | Large GWAS |
| rs12975366 | LILRB5 | GWAS association (p=1.0e-31) | Large GWAS |
| rs200561116 | — | GWAS association (p=2.0e-31) | Large GWAS |
| rs10948059 | GNMT | GWAS association (p=6.0e-31) | Large GWAS |
| rs2575876 | ABCA1 | GWAS association (p=8.0e-30) | Large GWAS |
| rs3768321 | — | GWAS association (p=8.0e-29) | Large GWAS |
| rs13322435 | — | GWAS association (p=1.0e-27) | Large GWAS |
| rs2952294 | — | GWAS association (p=2.0e-27) | Large GWAS |
| rs764992666 | — | GWAS association (p=5.0e-27) | Large GWAS |
| rs3184504 | SH2B3 | GWAS association (p=3.0e-26) | Large GWAS |
| rs7499892 | CETP | GWAS association (p=7.0e-26) | Large GWAS |
| rs2642438 | MTARC1 | GWAS association (p=7.0e-26) | Large GWAS |
| rs10787429 | — | GWAS association (p=2.0e-25) | Large GWAS |
| rs11621792 | — | GWAS association (p=2.0e-25) | Large GWAS |
| rs17489373 | — | GWAS association (p=5.0e-25) | Large GWAS |
| rs2866372 | — | GWAS association (p=1.0e-24) | Large GWAS |
| rs4939883 | LOC105372112 | GWAS association (p=2.0e-24) | Large GWAS |
| rs12363232 | — | GWAS association (p=2.0e-24) | Large GWAS |
| rs4149056 | SLCO1B1 | GWAS association (p=3.0e-22) | Large GWAS |
| rs662026 | — | GWAS association (p=4.0e-22) | Large GWAS |
| rs112758337 | — | GWAS association (p=1.0e-21) | Large GWAS |
| rs1047891 | CPS1 | GWAS association (p=2.0e-21) | Large GWAS |
| rs111981233 | — | GWAS association (p=3.0e-21) | Large GWAS |
| rs888655 | — | GWAS association (p=4.0e-21) | Large GWAS |
| rs933969 | — | GWAS association (p=4.0e-21) | Large GWAS |
| rs13107325 | SLC39A8 | GWAS association (p=4.0e-21) | Large GWAS |
| rs2108622 | CYP4F2 | GWAS association (p=5.0e-21) | Large GWAS |
| rs10790519 | — | GWAS association (p=8.0e-21) | Large GWAS |
| rs77960347 | LIPG | GWAS association (p=3.0e-20) | Large GWAS |
| rs2134263 | — | GWAS association (p=4.0e-20) | Large GWAS |
| rs339969 | RORA | GWAS association (p=7.0e-20) | Large GWAS |
| rs74780677 | COL7A1 | GWAS association (p=8.0e-20) | Large GWAS |
| rs4683605 | ZBTB38 | GWAS association (p=9.0e-20) | Large GWAS |
| rs635634 | — | GWAS association (p=1.0e-19) | Large GWAS |
| rs7197453 | — | GWAS association (p=2.0e-19) | Large GWAS |
| rs10242866 | — | GWAS association (p=2.0e-19) | Large GWAS |
| rs4719922 | — | GWAS association (p=9.0e-19) | Large GWAS |
| rs115018790 | — | GWAS association (p=3.0e-18) | Large GWAS |
| rs74758151 | — | GWAS association (p=4.0e-18) | Large GWAS |
| rs10733608 | — | GWAS association (p=7.0e-18) | Large GWAS |
| rs1065853 | — | GWAS association (p=1.0e-17) | Large GWAS |
| rs9616 | ADAR | GWAS association (p=2.0e-17) | Large GWAS |
| rs2494747 | — | GWAS association (p=2.0e-17) | Large GWAS |
| rs4646406 | PEMT | GWAS association (p=5.0e-17) | Large GWAS |
| rs2068888 | — | GWAS association (p=5.0e-17) | Large GWAS |
| rs705379 | PON1 | GWAS association (p=1.0e-16) | Large GWAS |
| rs4681746 | — | GWAS association (p=2.0e-16) | Large GWAS |
| rs7951028 | — | GWAS association (p=3.0e-16) | Large GWAS |
| rs1408579 | ERLIN1 | GWAS association (p=3.0e-16) | Large GWAS |
| rs1852539 | — | GWAS association (p=3.0e-16) | Large GWAS |
| rs114053844 | — | GWAS association (p=4.0e-16) | Large GWAS |
| rs4655772 | — | GWAS association (p=7.0e-16) | Large GWAS |
| rs7729012 | — | GWAS association (p=1.0e-15) | Large GWAS |
| rs3215710 | — | GWAS association (p=1.0e-15) | Large GWAS |
| rs10889335 | DOCK7 | GWAS association (p=2.0e-15) | Large GWAS |
| rs4921915 | — | GWAS association (p=2.0e-15) | Large GWAS |
| rs267734 | ANXA9 | GWAS association (p=3.0e-15) | Large GWAS |
| rs13402561 | — | GWAS association (p=5.0e-15) | Large GWAS |
| rs76428106 | — | GWAS association (p=8.0e-15) | Large GWAS |
| rs481595 | — | GWAS association (p=9.0e-15) | Large GWAS |
| rs429358 | APOE | GWAS association (p=3.0e-14) | Large GWAS |
| rs761087930 | — | GWAS association (p=5.0e-14) | Large GWAS |
| rs16926246 | HK1 | GWAS association (p=7.0e-14) | Large GWAS |
| rs3732356 | — | GWAS association (p=8.0e-14) | Large GWAS |
| rs555447483 | — | GWAS association (p=9.0e-14) | Large GWAS |
Showing the top 100 of 151 variants by evidence strength.
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.