Trait
SNPs associated with free cholesterol in large HDL measurement
301 genetic variants across 93 genes have been associated with free cholesterol in large HDL measurement in published research. Key genes include ABCA1, ACP1, ADCY5.
Associated variants301 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs6073958 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs328 | LPL | GWAS association (p=0.0e+00) | Large GWAS |
| rs183130 | CETP | GWAS association (p=0.0e+00) | Large GWAS |
| rs261290 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs174564 | FADS2 | GWAS association (p=0.0e+00) | Large GWAS |
| rs964184 | APOA5 | GWAS association (p=0.0e+00) | Large GWAS |
| rs261291 | — | GWAS association (p=5.0e-305) | Large GWAS |
| rs72836561 | — | GWAS association (p=6.0e-207) | Large GWAS |
| rs1077835 | LIPC | GWAS association (p=1.0e-200) | Large GWAS |
| rs72786786 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs6065904 | PLTP | GWAS association (p=1.0e-200) | Large GWAS |
| rs1601935 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs55747707 | MLXIPL | GWAS association (p=2.0e-170) | Large GWAS |
| rs77960347 | LIPG | GWAS association (p=5.0e-159) | Large GWAS |
| rs15285 | LPL | GWAS association (p=3.0e-144) | Large GWAS |
| rs676210 | APOB | GWAS association (p=4.0e-140) | Large GWAS |
| rs921919 | SCARB1 | GWAS association (p=6.0e-138) | Large GWAS |
| rs11122450 | — | GWAS association (p=1.0e-126) | Large GWAS |
| rs174574 | FADS2 | GWAS association (p=1.0e-109) | Large GWAS |
| rs2943647 | — | GWAS association (p=7.0e-107) | Large GWAS |
| rs998584 | POLR1C | GWAS association (p=1.0e-100) | Large GWAS |
| rs1260326 | GCKR | GWAS association (p=2.0e-90) | Large GWAS |
| rs325 | LPL | GWAS association (p=1.0e-86) | Large GWAS |
| rs12443634 | — | GWAS association (p=2.0e-83) | Large GWAS |
| rs2925979 | CMIP | GWAS association (p=5.0e-80) | Large GWAS |
| rs2954019 | — | GWAS association (p=2.0e-74) | Large GWAS |
| rs9769088 | CYP2W1 | GWAS association (p=3.0e-72) | Large GWAS |
| rs686030 | TTC39B | GWAS association (p=1.0e-70) | Large GWAS |
| rs2740488 | — | GWAS association (p=3.0e-68) | Large GWAS |
| rs4918722 | GPAM | GWAS association (p=3.0e-67) | Large GWAS |
| rs13107325 | SLC39A8 | GWAS association (p=1.0e-65) | Large GWAS |
| rs41272086 | — | GWAS association (p=3.0e-65) | Large GWAS |
| rs61805075 | — | GWAS association (p=4.0e-63) | Large GWAS |
| rs12154627 | — | GWAS association (p=2.0e-62) | Large GWAS |
| rs11644601 | — | GWAS association (p=3.0e-61) | Large GWAS |
| rs10184004 | — | GWAS association (p=1.0e-60) | Large GWAS |
| rs117760119 | — | GWAS association (p=4.0e-60) | Large GWAS |
| rs429358 | APOE | GWAS association (p=2.0e-57) | Large GWAS |
| rs112771035 | — | GWAS association (p=2.0e-56) | Large GWAS |
| rs4986970 | LCAT | GWAS association (p=5.0e-55) | Large GWAS |
| rs13271228 | — | GWAS association (p=1.0e-54) | Large GWAS |
| rs2068888 | — | GWAS association (p=4.0e-54) | Large GWAS |
| rs931992 | TCAP | GWAS association (p=1.0e-51) | Large GWAS |
| rs705379 | PON1 | GWAS association (p=2.0e-51) | Large GWAS |
| rs7012637 | — | GWAS association (p=1.0e-50) | Large GWAS |
| rs737338 | DOCK6 | GWAS association (p=4.0e-48) | Large GWAS |
| rs116843064 | ANGPTL4 | GWAS association (p=3.0e-47) | Large GWAS |
| rs12496730 | — | GWAS association (p=5.0e-47) | Large GWAS |
| rs10162642 | — | GWAS association (p=5.0e-46) | Large GWAS |
| rs72959041 | — | GWAS association (p=2.0e-44) | Large GWAS |
| rs71468663 | — | GWAS association (p=2.0e-43) | Large GWAS |
| rs4650999 | — | GWAS association (p=2.0e-40) | Large GWAS |
| rs147278638 | — | GWAS association (p=1.0e-39) | Large GWAS |
| rs2642438 | MTARC1 | GWAS association (p=4.0e-39) | Large GWAS |
| rs10864728 | GALNT2 | GWAS association (p=2.0e-38) | Large GWAS |
| rs78058190 | — | GWAS association (p=5.0e-38) | Large GWAS |
| rs4660808 | — | GWAS association (p=1.0e-37) | Large GWAS |
| rs13240994 | MLXIPL | GWAS association (p=2.0e-37) | Large GWAS |
| rs77243579 | CCDC162P | GWAS association (p=4.0e-37) | Large GWAS |
| rs34265539 | — | GWAS association (p=8.0e-37) | Large GWAS |
| rs2980888 | — | GWAS association (p=6.0e-36) | Large GWAS |
| rs13108218 | — | GWAS association (p=4.0e-35) | Large GWAS |
| rs673548 | APOB | GWAS association (p=4.0e-35) | Large GWAS |
| rs3809113 | — | GWAS association (p=7.0e-35) | Large GWAS |
| rs1635852 | JAZF1 | GWAS association (p=3.0e-34) | Large GWAS |
| rs140628616 | — | GWAS association (p=3.0e-33) | Large GWAS |
| rs6532796 | — | GWAS association (p=4.0e-33) | Large GWAS |
| rs778801698 | — | GWAS association (p=1.0e-32) | Large GWAS |
| rs59104589 | — | GWAS association (p=7.0e-32) | Large GWAS |
| rs3184504 | SH2B3 | GWAS association (p=2.0e-31) | Large GWAS |
| rs13137144 | DGKQ | GWAS association (p=2.0e-31) | Large GWAS |
| rs2745352 | RSPO3 | GWAS association (p=3.0e-31) | Large GWAS |
| rs634869 | — | GWAS association (p=7.0e-31) | Large GWAS |
| rs7134375 | LOC105369688 | GWAS association (p=2.0e-29) | Large GWAS |
| rs72823013 | LOC105378493 | GWAS association (p=1.0e-28) | Large GWAS |
| rs34154818 | — | GWAS association (p=1.0e-28) | Large GWAS |
| rs34062580 | MLXIPL | GWAS association (p=2.0e-28) | Large GWAS |
| rs3758672 | NR1H3 | GWAS association (p=2.0e-28) | Large GWAS |
| rs150844304 | — | GWAS association (p=3.0e-28) | Large GWAS |
| rs11060344 | HIP1R | GWAS association (p=5.0e-28) | Large GWAS |
| rs58574748 | — | GWAS association (p=8.0e-28) | Large GWAS |
| rs333947 | — | GWAS association (p=1.0e-27) | Large GWAS |
| rs10012624 | FAM13A | GWAS association (p=1.0e-27) | Large GWAS |
| rs9375188 | — | GWAS association (p=1.0e-27) | Large GWAS |
| rs58542926 | TM6SF2 | GWAS association (p=2.0e-27) | Large GWAS |
| rs4234589 | — | GWAS association (p=4.0e-27) | Large GWAS |
| rs17036170 | PPARG | GWAS association (p=5.0e-27) | Large GWAS |
| rs1561139 | NUP93 | GWAS association (p=5.0e-27) | Large GWAS |
| rs62271373 | — | GWAS association (p=2.0e-25) | Large GWAS |
| rs390387 | UBE2L3 | GWAS association (p=6.0e-25) | Large GWAS |
| rs193084249 | — | GWAS association (p=2.0e-24) | Large GWAS |
| rs1623060 | — | GWAS association (p=2.0e-24) | Large GWAS |
| rs7241918 | LOC105372112 | GWAS association (p=2.0e-24) | Large GWAS |
| rs1128249 | — | GWAS association (p=4.0e-24) | Large GWAS |
| rs4913534 | — | GWAS association (p=7.0e-24) | Large GWAS |
| rs58301047 | GPIHBP1 | GWAS association (p=1.0e-23) | Large GWAS |
| rs6800707 | NISCH | GWAS association (p=3.0e-23) | Large GWAS |
| rs3825061 | VPS11 | GWAS association (p=1.0e-22) | Large GWAS |
| rs7599 | — | GWAS association (p=1.0e-22) | Large GWAS |
| rs10761785 | REEP3 | GWAS association (p=2.0e-22) | Large GWAS |
Showing the top 100 of 301 variants by evidence strength.
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.