TNFSF4
TNF superfamily member 4
Summary
This gene encodes a cytokine of the tumor necrosis factor (TNF) ligand family. The encoded protein functions in T cell antigen-presenting cell (APC) interactions and mediates adhesion of activated T cells to endothelial cells. Polymorphisms in this gene have been associated with Sjogren's syndrome and systemic lupus erythematosus. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2014]
Known Variants43 total
| rsid | Position (GRCh37) | Alleles | Class | ClinVar |
|---|---|---|---|---|
| rs4916312 | 1:173,146,357 | G/A | upstream gene variant | — |
| rs4090391 | 1:173,147,090 | C/T | upstream gene variant | — |
| rs10127495 | 1:173,148,671 | A/C | downstream gene variant | — |
| rs7514229 | 1:173,154,304 | G/T | 3 prime UTR variant | — |
| rs61826345 | 1:173,154,354 | A/C | 3 prime UTR variant | — |
| rs2525728080 | 1:173,155,708 | C/T | — | uncertain significance |
| rs377655834 | 1:173,155,729 | G/A | — | likely benign |
| rs566629355 | 1:173,155,822 | G/C | — | uncertain significance |
| rs146261831 | 1:173,155,860 | C/T | — | uncertain significance |
| rs745541182 | 1:173,155,945 | C/T | — | uncertain significance |
| rs3861950 | 1:173,156,292 | T/C | intron variant | — |
| rs141837753 | 1:173,157,676 | G/A | — | benign |
| rs147675528 | 1:173,157,698 | C/T | — | likely benign |
| rs7518129 | 1:173,163,568 | A/G | intron variant | — |
| rs1234313 | 1:173,166,247 | A/G | intron variant | — |
| rs13343107 | 1:173,168,321 | A/G | intron variant | — |
| rs10912564 | 1:173,170,618 | C/T | intron variant | — |
| rs16845607 | 1:173,173,617 | G/A | intron variant | — |
| rs3850641 | 1:173,175,832 | A/G | intron variant | — |
| rs45454293 | 1:173,177,236 | C/T | upstream gene variant | — |
| rs1234314 | 1:173,177,392 | C/A | — | — |
| rs1234315 | 1:173,178,463 | C/A | — | — |
| rs1234317 | 1:173,187,775 | C/T | intergenic variant | — |
| rs2205960 | 1:173,191,475 | G/A | — | — |
| rs844644 | 1:173,209,495 | A/C | intergenic variant | — |
| rs117278480 | 1:173,210,789 | A/G | regulatory region variant | — |
| rs12039904 | 1:173,212,273 | C/G | — | — |
| rs12137747 | 1:173,213,790 | C/T | — | — |
| rs844648 | 1:173,223,863 | G/A | intergenic variant | — |
| rs704840 | 1:173,226,195 | T/G | intergenic variant | — |
| rs10912580 | 1:173,256,550 | A/G | intergenic variant | — |
| rs144551616 | 1:173,262,228 | A/G | intergenic variant | — |
| rs4916321 | 1:173,284,199 | G/A | — | — |
| rs1342038 | 1:173,301,516 | G/C | — | — |
| rs6681482 | 1:173,306,646 | G/A | intergenic variant | — |
| rs10798269 | 1:173,309,713 | A/G | intergenic variant | — |
| rs10912594 | 1:173,318,664 | G/C | upstream gene variant | — |
| rs2422345 | 1:173,337,747 | G/A | upstream gene variant | — |
| rs10753074 | 1:173,346,343 | C/G | — | — |
| rs2105325 | 1:173,349,725 | A/T | — | — |
| rs185835406 | 1:173,370,858 | A/G | intergenic variant | — |
| rs561708165 | 1:173,378,833 | A/C | — | — |
| rs544414025 | 1:173,400,283 | G/A | — | — |
Gene information from NCBI Gene. Variant classifications from ClinVar.