Trait
SNPs associated with Free cholesterol in small HDL
166 genetic variants across 59 genes have been associated with Free cholesterol in small HDL in published research. Key genes include ABCA1, ABCA6, ADAR.
Associated variants166 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs6073958 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs1260326 | GCKR | GWAS association (p=0.0e+00) | Large GWAS |
| rs183130 | CETP | GWAS association (p=0.0e+00) | Large GWAS |
| rs746735 | DOCK7 | GWAS association (p=2.0e-221) | Large GWAS |
| rs7412 | APOE | GWAS association (p=4.0e-210) | Large GWAS |
| rs28601761 | — | GWAS association (p=4.0e-189) | Large GWAS |
| rs77960347 | LIPG | GWAS association (p=6.0e-169) | Large GWAS |
| rs782470771 | — | GWAS association (p=4.0e-143) | Large GWAS |
| rs9987289 | LOC157273 | GWAS association (p=1.0e-142) | Large GWAS |
| rs58542926 | TM6SF2 | GWAS association (p=4.0e-101) | Large GWAS |
| rs2740488 | — | GWAS association (p=1.0e-96) | Large GWAS |
| rs737338 | DOCK6 | GWAS association (p=2.0e-81) | Large GWAS |
| rs541041 | LOC124905593 | GWAS association (p=6.0e-79) | Large GWAS |
| rs139953093 | — | GWAS association (p=4.0e-73) | Large GWAS |
| rs111841857 | — | GWAS association (p=1.0e-69) | Large GWAS |
| rs531117 | — | GWAS association (p=6.0e-61) | Large GWAS |
| rs686030 | TTC39B | GWAS association (p=8.0e-58) | Large GWAS |
| rs635634 | — | GWAS association (p=9.0e-57) | Large GWAS |
| rs78132593 | — | GWAS association (p=2.0e-52) | Large GWAS |
| rs3816117 | CETP | GWAS association (p=1.0e-51) | Large GWAS |
| rs13108218 | — | GWAS association (p=3.0e-48) | Large GWAS |
| rs34707604 | — | GWAS association (p=4.0e-46) | Large GWAS |
| rs112875651 | — | GWAS association (p=4.0e-39) | Large GWAS |
| rs4149056 | SLCO1B1 | GWAS association (p=4.0e-37) | Large GWAS |
| rs6511720 | LDLR | GWAS association (p=2.0e-36) | Large GWAS |
| rs9304381 | LOC105372112 | GWAS association (p=7.0e-36) | Large GWAS |
| rs72836561 | — | GWAS association (p=2.0e-35) | Large GWAS |
| rs1002687 | DOCK7 | GWAS association (p=5.0e-35) | Large GWAS |
| rs131658 | UBE2L3 | GWAS association (p=2.0e-34) | Large GWAS |
| rs55714927 | — | GWAS association (p=1.0e-33) | Large GWAS |
| rs4656292 | — | GWAS association (p=2.0e-33) | Large GWAS |
| rs12740374 | CELSR2 | GWAS association (p=3.0e-33) | Large GWAS |
| rs17145738 | TBL2 | GWAS association (p=8.0e-33) | Large GWAS |
| rs11591147 | PCSK9 | GWAS association (p=1.0e-32) | Large GWAS |
| rs4986970 | LCAT | GWAS association (p=3.0e-32) | Large GWAS |
| rs894211 | — | GWAS association (p=1.0e-31) | Large GWAS |
| rs140584594 | GSTM1 | GWAS association (p=4.0e-31) | Large GWAS |
| rs4969142 | PGS1 | GWAS association (p=2.0e-30) | Large GWAS |
| rs174546 | FADS1 | GWAS association (p=6.0e-30) | Large GWAS |
| rs2642438 | MTARC1 | GWAS association (p=7.0e-30) | Large GWAS |
| rs4240624 | LOC157273 | GWAS association (p=3.0e-28) | Large GWAS |
| rs12363232 | — | GWAS association (p=5.0e-28) | Large GWAS |
| rs633695 | — | GWAS association (p=9.0e-28) | Large GWAS |
| rs838146 | IZUMO1 | GWAS association (p=5.0e-27) | Large GWAS |
| rs10787429 | — | GWAS association (p=5.0e-27) | Large GWAS |
| rs10778215 | C12orf42 | GWAS association (p=6.0e-26) | Large GWAS |
| rs174567 | FADS2 | GWAS association (p=7.0e-26) | Large GWAS |
| rs2071379 | — | GWAS association (p=7.0e-26) | Large GWAS |
| rs3184504 | SH2B3 | GWAS association (p=3.0e-25) | Large GWAS |
| rs10883451 | ERLIN1 | GWAS association (p=6.0e-25) | Large GWAS |
| rs12975366 | LILRB5 | GWAS association (p=4.0e-24) | Large GWAS |
| rs933969 | — | GWAS association (p=1.0e-23) | Large GWAS |
| rs13107325 | SLC39A8 | GWAS association (p=1.0e-23) | Large GWAS |
| rs2866372 | — | GWAS association (p=1.0e-23) | Large GWAS |
| rs7086046 | — | GWAS association (p=2.0e-23) | Large GWAS |
| rs1555290 | — | GWAS association (p=4.0e-23) | Large GWAS |
| rs556107 | — | GWAS association (p=4.0e-22) | Large GWAS |
| rs75802599 | — | GWAS association (p=9.0e-22) | Large GWAS |
| rs1367117 | APOB | GWAS association (p=1.0e-21) | Large GWAS |
| rs11621792 | — | GWAS association (p=1.0e-21) | Large GWAS |
| rs1943973 | — | GWAS association (p=2.0e-21) | Large GWAS |
| rs2494747 | — | GWAS association (p=6.0e-21) | Large GWAS |
| rs10948059 | GNMT | GWAS association (p=8.0e-21) | Large GWAS |
| rs165316 | — | GWAS association (p=8.0e-21) | Large GWAS |
| rs2068888 | — | GWAS association (p=9.0e-21) | Large GWAS |
| rs11057273 | SBNO1 | GWAS association (p=1.0e-20) | Large GWAS |
| rs62276455 | — | GWAS association (p=3.0e-20) | Large GWAS |
| rs55747707 | MLXIPL | GWAS association (p=6.0e-20) | Large GWAS |
| rs2049865 | — | GWAS association (p=6.0e-20) | Large GWAS |
| rs10790519 | — | GWAS association (p=2.0e-19) | Large GWAS |
| rs759779762 | — | GWAS association (p=3.0e-19) | Large GWAS |
| rs72992015 | — | GWAS association (p=4.0e-19) | Large GWAS |
| rs4655772 | — | GWAS association (p=6.0e-18) | Large GWAS |
| rs76428106 | — | GWAS association (p=2.0e-17) | Large GWAS |
| rs3732356 | — | GWAS association (p=2.0e-17) | Large GWAS |
| rs2544645 | — | GWAS association (p=3.0e-17) | Large GWAS |
| rs5790043 | — | GWAS association (p=4.0e-17) | Large GWAS |
| rs3768321 | — | GWAS association (p=4.0e-17) | Large GWAS |
| rs673335 | — | GWAS association (p=5.0e-17) | Large GWAS |
| rs9616 | ADAR | GWAS association (p=6.0e-17) | Large GWAS |
| rs4764939 | — | GWAS association (p=6.0e-17) | Large GWAS |
| rs1065853 | — | GWAS association (p=7.0e-17) | Large GWAS |
| rs10205292 | — | GWAS association (p=8.0e-17) | Large GWAS |
| rs8025505 | — | GWAS association (p=4.0e-16) | Large GWAS |
| rs2108622 | CYP4F2 | GWAS association (p=6.0e-16) | Large GWAS |
| rs141866277 | — | GWAS association (p=2.0e-15) | Large GWAS |
| rs4681746 | — | GWAS association (p=2.0e-15) | Large GWAS |
| rs2041810 | — | GWAS association (p=2.0e-15) | Large GWAS |
| rs76061303 | — | GWAS association (p=3.0e-15) | Large GWAS |
| rs11136271 | — | GWAS association (p=3.0e-15) | Large GWAS |
| rs4979372 | — | GWAS association (p=3.0e-15) | Large GWAS |
| rs738409 | PNPLA3 | GWAS association (p=5.0e-15) | Large GWAS |
| rs11789603 | ABCA1 | GWAS association (p=6.0e-15) | Large GWAS |
| rs6503222 | — | GWAS association (p=6.0e-15) | Large GWAS |
| rs6734238 | — | GWAS association (p=3.0e-14) | Large GWAS |
| rs75667995 | — | GWAS association (p=3.0e-14) | Large GWAS |
| rs117815533 | — | GWAS association (p=3.0e-14) | Large GWAS |
| rs3822854 | FRK | GWAS association (p=3.0e-14) | Large GWAS |
| rs11927405 | — | GWAS association (p=4.0e-14) | Large GWAS |
| rs66731853 | — | GWAS association (p=4.0e-14) | Large GWAS |
Showing the top 100 of 166 variants by evidence strength.
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.