Trait
SNPs associated with free cholesterol to total lipids in large HDL percentage
160 genetic variants across 70 genes have been associated with free cholesterol to total lipids in large HDL percentage in published research. Key genes include ABCA6, ABCG5, ABLIM3.
Associated variants160 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs821840 | CETP | GWAS association (p=0.0e+00) | Large GWAS |
| rs174564 | FADS2 | GWAS association (p=0.0e+00) | Large GWAS |
| rs261291 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs1065853 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs58952297 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs2070895 | LIPC | GWAS association (p=0.0e+00) | Large GWAS |
| rs4812975 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs72786786 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs964184 | APOA5 | GWAS association (p=6.0e-242) | Large GWAS |
| rs10468017 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs118147862 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs1160983 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs6065904 | PLTP | GWAS association (p=1.0e-200) | Large GWAS |
| rs12151108 | — | GWAS association (p=3.0e-199) | Large GWAS |
| rs782470771 | — | GWAS association (p=2.0e-187) | Large GWAS |
| rs563290 | — | GWAS association (p=3.0e-180) | Large GWAS |
| rs12740374 | CELSR2 | GWAS association (p=3.0e-168) | Large GWAS |
| rs328 | LPL | GWAS association (p=5.0e-162) | Large GWAS |
| rs1260326 | GCKR | GWAS association (p=8.0e-147) | Large GWAS |
| rs633695 | — | GWAS association (p=3.0e-112) | Large GWAS |
| rs4656292 | — | GWAS association (p=1.0e-65) | Large GWAS |
| rs72836561 | — | GWAS association (p=1.0e-64) | Large GWAS |
| rs562338 | — | GWAS association (p=3.0e-59) | Large GWAS |
| rs763938651 | — | GWAS association (p=4.0e-59) | Large GWAS |
| rs9769088 | CYP2W1 | GWAS association (p=3.0e-54) | Large GWAS |
| rs13275864 | — | GWAS association (p=3.0e-52) | Large GWAS |
| rs11644601 | — | GWAS association (p=1.0e-50) | Large GWAS |
| rs11927405 | — | GWAS association (p=5.0e-49) | Large GWAS |
| rs61941677 | — | GWAS association (p=2.0e-47) | Large GWAS |
| rs73015021 | — | GWAS association (p=3.0e-47) | Large GWAS |
| rs34062580 | MLXIPL | GWAS association (p=2.0e-43) | Large GWAS |
| rs13108218 | — | GWAS association (p=1.0e-42) | Large GWAS |
| rs11591147 | PCSK9 | GWAS association (p=3.0e-39) | Large GWAS |
| rs705379 | PON1 | GWAS association (p=5.0e-39) | Large GWAS |
| rs6938647 | — | GWAS association (p=2.0e-35) | Large GWAS |
| rs2943659 | — | GWAS association (p=4.0e-35) | Large GWAS |
| rs339969 | RORA | GWAS association (p=2.0e-33) | Large GWAS |
| rs998584 | POLR1C | GWAS association (p=2.0e-32) | Large GWAS |
| rs7111987 | — | GWAS association (p=2.0e-32) | Large GWAS |
| rs325 | LPL | GWAS association (p=2.0e-32) | Large GWAS |
| rs7970695 | HNF1A | GWAS association (p=4.0e-31) | Large GWAS |
| rs7310615 | SH2B3 | GWAS association (p=9.0e-31) | Large GWAS |
| rs1635852 | JAZF1 | GWAS association (p=1.0e-30) | Large GWAS |
| rs12750160 | USP24 | GWAS association (p=7.0e-30) | Large GWAS |
| rs79439217 | — | GWAS association (p=2.0e-28) | Large GWAS |
| rs12443634 | — | GWAS association (p=2.0e-28) | Large GWAS |
| rs1801689 | APOH | GWAS association (p=8.0e-27) | Large GWAS |
| rs780094 | GCKR | GWAS association (p=4.0e-26) | Large GWAS |
| rs771193934 | — | GWAS association (p=3.0e-25) | Large GWAS |
| rs11887534 | ABCG5 | GWAS association (p=9.0e-25) | Large GWAS |
| rs9378248 | HLA-B | GWAS association (p=2.0e-24) | Large GWAS |
| rs4918722 | GPAM | GWAS association (p=3.0e-23) | Large GWAS |
| rs2952294 | — | GWAS association (p=4.0e-23) | Large GWAS |
| rs12247907 | REEP3 | GWAS association (p=4.0e-23) | Large GWAS |
| rs142005893 | — | GWAS association (p=4.0e-23) | Large GWAS |
| rs7554255 | MACO1 | GWAS association (p=2.0e-22) | Large GWAS |
| rs113290361 | — | GWAS association (p=6.0e-22) | Large GWAS |
| rs41289512 | — | GWAS association (p=6.0e-22) | Large GWAS |
| rs17036170 | PPARG | GWAS association (p=1.0e-21) | Large GWAS |
| rs2925979 | CMIP | GWAS association (p=4.0e-21) | Large GWAS |
| rs35175715 | SLC12A5 | GWAS association (p=7.0e-21) | Large GWAS |
| rs3843482 | HMGCR | GWAS association (p=3.0e-20) | Large GWAS |
| rs117760119 | — | GWAS association (p=6.0e-20) | Large GWAS |
| rs4418728 | — | GWAS association (p=8.0e-20) | Large GWAS |
| rs9375188 | — | GWAS association (p=8.0e-20) | Large GWAS |
| rs59484402 | — | GWAS association (p=1.0e-19) | Large GWAS |
| rs4722551 | LOC105375199 | GWAS association (p=7.0e-19) | Large GWAS |
| rs77795767 | CCDC162P | GWAS association (p=7.0e-19) | Large GWAS |
| rs117310449 | — | GWAS association (p=7.0e-19) | Large GWAS |
| rs553427 | — | GWAS association (p=9.0e-19) | Large GWAS |
| rs267738 | CERS2 | GWAS association (p=2.0e-18) | Large GWAS |
| rs77542162 | ABCA6 | GWAS association (p=3.0e-18) | Large GWAS |
| rs13154066 | — | GWAS association (p=7.0e-18) | Large GWAS |
| rs5835988 | — | GWAS association (p=1.0e-17) | Large GWAS |
| rs34154818 | — | GWAS association (p=2.0e-17) | Large GWAS |
| rs686030 | TTC39B | GWAS association (p=3.0e-17) | Large GWAS |
| rs10064506 | — | GWAS association (p=8.0e-17) | Large GWAS |
| rs4711423 | LOC101929309 | GWAS association (p=1.0e-16) | Large GWAS |
| rs2642438 | MTARC1 | GWAS association (p=1.0e-16) | Large GWAS |
| rs5082 | APOA2 | GWAS association (p=3.0e-16) | Large GWAS |
| rs577721086 | RSPO3 | GWAS association (p=4.0e-16) | Large GWAS |
| rs6532796 | — | GWAS association (p=4.0e-16) | Large GWAS |
| rs11071373 | — | GWAS association (p=5.0e-16) | Large GWAS |
| rs3824949 | — | GWAS association (p=8.0e-16) | Large GWAS |
| rs7709477 | ZNF366 | GWAS association (p=8.0e-16) | Large GWAS |
| rs71468663 | — | GWAS association (p=9.0e-16) | Large GWAS |
| rs2665403 | — | GWAS association (p=1.0e-15) | Large GWAS |
| rs4846917 | GALNT2 | GWAS association (p=2.0e-15) | Large GWAS |
| rs2952152 | PGAP3 | GWAS association (p=2.0e-15) | Large GWAS |
| rs58574748 | — | GWAS association (p=2.0e-15) | Large GWAS |
| rs72647336 | — | GWAS association (p=3.0e-15) | Large GWAS |
| rs4921915 | — | GWAS association (p=4.0e-15) | Large GWAS |
| rs796353824 | — | GWAS association (p=4.0e-15) | Large GWAS |
| rs3782735 | — | GWAS association (p=7.0e-15) | Large GWAS |
| rs13107325 | SLC39A8 | GWAS association (p=1.0e-14) | Large GWAS |
| rs62112763 | INSR | GWAS association (p=1.0e-14) | Large GWAS |
| rs9844972 | — | GWAS association (p=2.0e-14) | Large GWAS |
| rs738408 | PNPLA3 | GWAS association (p=5.0e-14) | Large GWAS |
| rs4077194 | — | GWAS association (p=6.0e-14) | Large GWAS |
| rs13069734 | ZBTB38 | GWAS association (p=6.0e-14) | Large GWAS |
Showing the top 100 of 160 variants by evidence strength.
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.