Trait
SNPs associated with free cholesterol to total lipids in medium LDL percentage
243 genetic variants across 75 genes have been associated with free cholesterol to total lipids in medium LDL percentage in published research. Key genes include ABCA1, ADRB1, AFF1.
Associated variants243 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs1260326 | GCKR | GWAS association (p=0.0e+00) | Large GWAS |
| rs28601761 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs964184 | APOA5 | GWAS association (p=0.0e+00) | Large GWAS |
| rs676210 | APOB | GWAS association (p=0.0e+00) | Large GWAS |
| rs328 | LPL | GWAS association (p=0.0e+00) | Large GWAS |
| rs1065853 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs782470771 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs10455872 | LPA | GWAS association (p=3.0e-309) | Large GWAS |
| rs174564 | FADS2 | GWAS association (p=2.0e-301) | Large GWAS |
| rs79439217 | — | GWAS association (p=6.0e-289) | Large GWAS |
| rs41290120 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs139974673 | — | GWAS association (p=3.0e-182) | Large GWAS |
| rs111784051 | TOMM40 | GWAS association (p=2.0e-175) | Large GWAS |
| rs247617 | — | GWAS association (p=4.0e-167) | Large GWAS |
| rs117026536 | LPL | GWAS association (p=9.0e-167) | Large GWAS |
| rs1077835 | LIPC | GWAS association (p=9.0e-144) | Large GWAS |
| rs72836561 | — | GWAS association (p=6.0e-139) | Large GWAS |
| rs139953093 | — | GWAS association (p=2.0e-105) | Large GWAS |
| rs2972144 | — | GWAS association (p=4.0e-97) | Large GWAS |
| rs7924036 | — | GWAS association (p=2.0e-90) | Large GWAS |
| rs4665710 | — | GWAS association (p=4.0e-81) | Large GWAS |
| rs34060476 | — | GWAS association (p=1.0e-79) | Large GWAS |
| rs11122450 | — | GWAS association (p=2.0e-79) | Large GWAS |
| rs998584 | POLR1C | GWAS association (p=9.0e-78) | Large GWAS |
| rs3775228 | — | GWAS association (p=1.0e-77) | Large GWAS |
| rs13389219 | COBLL1 | GWAS association (p=2.0e-75) | Large GWAS |
| rs11429307 | — | GWAS association (p=6.0e-73) | Large GWAS |
| rs28383314 | — | GWAS association (p=2.0e-69) | Large GWAS |
| rs2966092 | — | GWAS association (p=3.0e-67) | Large GWAS |
| rs199978239 | — | GWAS association (p=9.0e-67) | Large GWAS |
| rs2925979 | CMIP | GWAS association (p=1.0e-66) | Large GWAS |
| rs117760119 | — | GWAS association (p=9.0e-66) | Large GWAS |
| rs58542926 | TM6SF2 | GWAS association (p=9.0e-65) | Large GWAS |
| rs4722551 | LOC105375199 | GWAS association (p=3.0e-62) | Large GWAS |
| rs684773 | — | GWAS association (p=3.0e-60) | Large GWAS |
| rs78058190 | — | GWAS association (p=6.0e-60) | Large GWAS |
| rs116843064 | ANGPTL4 | GWAS association (p=1.0e-57) | Large GWAS |
| rs11207997 | — | GWAS association (p=1.0e-56) | Large GWAS |
| rs117733303 | — | GWAS association (p=1.0e-56) | Large GWAS |
| rs2068888 | — | GWAS association (p=5.0e-53) | Large GWAS |
| rs2982521 | — | GWAS association (p=1.0e-51) | Large GWAS |
| rs4921913 | — | GWAS association (p=2.0e-50) | Large GWAS |
| rs174580 | FADS2 | GWAS association (p=4.0e-50) | Large GWAS |
| rs12928099 | PDXDC1 | GWAS association (p=7.0e-50) | Large GWAS |
| rs28588745 | — | GWAS association (p=2.0e-48) | Large GWAS |
| rs10773049 | ZNF664-RFLNA | GWAS association (p=1.0e-46) | Large GWAS |
| rs10838681 | NR1H3 | GWAS association (p=2.0e-43) | Large GWAS |
| rs72959041 | — | GWAS association (p=5.0e-43) | Large GWAS |
| rs11206374 | — | GWAS association (p=3.0e-41) | Large GWAS |
| rs12740374 | CELSR2 | GWAS association (p=3.0e-39) | Large GWAS |
| rs1801689 | APOH | GWAS association (p=1.0e-38) | Large GWAS |
| rs7177289 | — | GWAS association (p=7.0e-38) | Large GWAS |
| rs150844304 | — | GWAS association (p=2.0e-37) | Large GWAS |
| rs71468663 | — | GWAS association (p=2.0e-37) | Large GWAS |
| rs6800707 | NISCH | GWAS association (p=1.0e-35) | Large GWAS |
| rs141469619 | SIK3 | GWAS association (p=3.0e-35) | Large GWAS |
| rs4704834 | — | GWAS association (p=6.0e-35) | Large GWAS |
| rs821840 | CETP | GWAS association (p=1.0e-34) | Large GWAS |
| rs4969179 | — | GWAS association (p=1.0e-32) | Large GWAS |
| rs2122982 | R3HDM2 | GWAS association (p=4.0e-32) | Large GWAS |
| rs13108218 | — | GWAS association (p=3.0e-30) | Large GWAS |
| rs2267373 | — | GWAS association (p=4.0e-30) | Large GWAS |
| rs696825 | HNRNPK | GWAS association (p=4.0e-29) | Large GWAS |
| rs6458869 | — | GWAS association (p=6.0e-29) | Large GWAS |
| rs6486122 | ARNTL | GWAS association (p=1.0e-28) | Large GWAS |
| rs62271373 | — | GWAS association (p=2.0e-28) | Large GWAS |
| rs2229738 | CPT1A | GWAS association (p=4.0e-27) | Large GWAS |
| rs7140110 | — | GWAS association (p=2.0e-26) | Large GWAS |
| rs1045241 | TNFAIP8 | GWAS association (p=7.0e-26) | Large GWAS |
| rs1698113 | FUT1 | GWAS association (p=2.0e-25) | Large GWAS |
| rs1128249 | — | GWAS association (p=5.0e-25) | Large GWAS |
| rs1037117 | — | GWAS association (p=5.0e-25) | Large GWAS |
| rs11635675 | — | GWAS association (p=5.0e-25) | Large GWAS |
| rs781006834 | — | GWAS association (p=5.0e-25) | Large GWAS |
| rs11045171 | — | GWAS association (p=8.0e-25) | Large GWAS |
| rs704 | VTN | GWAS association (p=2.0e-24) | Large GWAS |
| rs62102718 | — | GWAS association (p=8.0e-24) | Large GWAS |
| rs12119979 | LYPLAL1-AS1 | GWAS association (p=1.0e-23) | Large GWAS |
| rs79598313 | — | GWAS association (p=1.0e-23) | Large GWAS |
| rs653178 | ATXN2 | GWAS association (p=2.0e-23) | Large GWAS |
| rs34417180 | — | GWAS association (p=6.0e-23) | Large GWAS |
| rs2035816 | — | GWAS association (p=1.0e-22) | Large GWAS |
| rs11655056 | — | GWAS association (p=1.0e-22) | Large GWAS |
| rs67261871 | LINC02029 | GWAS association (p=3.0e-22) | Large GWAS |
| rs2487294 | — | GWAS association (p=3.0e-22) | Large GWAS |
| rs1009360 | — | GWAS association (p=6.0e-22) | Large GWAS |
| rs5402 | SLC2A2 | GWAS association (p=1.0e-21) | Large GWAS |
| rs2963468 | — | GWAS association (p=2.0e-21) | Large GWAS |
| rs2275647 | — | GWAS association (p=3.0e-21) | Large GWAS |
| rs862320 | — | GWAS association (p=3.0e-21) | Large GWAS |
| rs4976033 | — | GWAS association (p=1.0e-20) | Large GWAS |
| rs13107325 | SLC39A8 | GWAS association (p=2.0e-20) | Large GWAS |
| rs74501283 | GBF1 | GWAS association (p=2.0e-20) | Large GWAS |
| rs7138037 | RIC8B | GWAS association (p=3.0e-20) | Large GWAS |
| rs11146021 | INPP5E | GWAS association (p=3.0e-20) | Large GWAS |
| rs78025076 | — | GWAS association (p=3.0e-20) | Large GWAS |
| rs3936511 | — | GWAS association (p=7.0e-20) | Large GWAS |
| rs2307111 | POC5 | GWAS association (p=8.0e-20) | Large GWAS |
| rs771193934 | — | GWAS association (p=9.0e-20) | Large GWAS |
| rs10908900 | — | GWAS association (p=3.0e-19) | Large GWAS |
Showing the top 100 of 243 variants by evidence strength.
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.