Trait
SNPs associated with free cholesterol in very large HDL measurement
262 genetic variants across 89 genes have been associated with free cholesterol in very large HDL measurement in published research. Key genes include ABCA1, ABCG5, ABCG8.
Associated variants262 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs6073958 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs964184 | APOA5 | GWAS association (p=0.0e+00) | Large GWAS |
| rs2070895 | LIPC | GWAS association (p=0.0e+00) | Large GWAS |
| rs183130 | CETP | GWAS association (p=0.0e+00) | Large GWAS |
| rs139953093 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs174564 | FADS2 | GWAS association (p=0.0e+00) | Large GWAS |
| rs1065853 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs1077835 | LIPC | GWAS association (p=0.0e+00) | Large GWAS |
| rs3764261 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs1260326 | GCKR | GWAS association (p=4.0e-301) | Large GWAS |
| rs35493868 | — | GWAS association (p=2.0e-273) | Large GWAS |
| rs328 | LPL | GWAS association (p=1.0e-220) | Large GWAS |
| rs7412 | APOE | GWAS association (p=1.0e-200) | Large GWAS |
| rs10468017 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs6065904 | PLTP | GWAS association (p=1.0e-200) | Large GWAS |
| rs821840 | CETP | GWAS association (p=1.0e-178) | Large GWAS |
| rs174574 | FADS2 | GWAS association (p=8.0e-159) | Large GWAS |
| rs13702 | LPL | GWAS association (p=8.0e-146) | Large GWAS |
| rs633695 | — | GWAS association (p=2.0e-129) | Large GWAS |
| rs174554 | FADS1 | GWAS association (p=2.0e-107) | Large GWAS |
| rs12151108 | — | GWAS association (p=8.0e-87) | Large GWAS |
| rs28601761 | — | GWAS association (p=1.0e-86) | Large GWAS |
| rs676210 | APOB | GWAS association (p=4.0e-86) | Large GWAS |
| rs4656292 | — | GWAS association (p=7.0e-83) | Large GWAS |
| rs15285 | LPL | GWAS association (p=2.0e-79) | Large GWAS |
| rs79439217 | — | GWAS association (p=4.0e-75) | Large GWAS |
| rs61941677 | — | GWAS association (p=7.0e-73) | Large GWAS |
| rs12740374 | CELSR2 | GWAS association (p=4.0e-65) | Large GWAS |
| rs2138161 | — | GWAS association (p=1.0e-58) | Large GWAS |
| rs11927405 | — | GWAS association (p=8.0e-55) | Large GWAS |
| rs13108218 | — | GWAS association (p=2.0e-54) | Large GWAS |
| rs998584 | POLR1C | GWAS association (p=1.0e-53) | Large GWAS |
| rs34062580 | MLXIPL | GWAS association (p=3.0e-53) | Large GWAS |
| rs72836561 | — | GWAS association (p=7.0e-53) | Large GWAS |
| rs11644601 | — | GWAS association (p=1.0e-52) | Large GWAS |
| rs9687846 | — | GWAS association (p=3.0e-51) | Large GWAS |
| rs9769088 | CYP2W1 | GWAS association (p=3.0e-51) | Large GWAS |
| rs12443634 | — | GWAS association (p=1.0e-49) | Large GWAS |
| rs4418728 | — | GWAS association (p=2.0e-48) | Large GWAS |
| rs41272086 | — | GWAS association (p=2.0e-44) | Large GWAS |
| rs77960347 | LIPG | GWAS association (p=3.0e-43) | Large GWAS |
| rs2645430 | FDFT1 | GWAS association (p=9.0e-43) | Large GWAS |
| rs1883025 | ABCA1 | GWAS association (p=3.0e-41) | Large GWAS |
| rs2925979 | CMIP | GWAS association (p=3.0e-41) | Large GWAS |
| rs13389219 | COBLL1 | GWAS association (p=5.0e-40) | Large GWAS |
| rs705379 | PON1 | GWAS association (p=5.0e-39) | Large GWAS |
| rs58542926 | TM6SF2 | GWAS association (p=1.0e-38) | Large GWAS |
| rs325 | LPL | GWAS association (p=2.0e-38) | Large GWAS |
| rs10184004 | — | GWAS association (p=2.0e-38) | Large GWAS |
| rs686030 | TTC39B | GWAS association (p=1.0e-37) | Large GWAS |
| rs7924036 | — | GWAS association (p=1.0e-37) | Large GWAS |
| rs59484402 | — | GWAS association (p=1.0e-36) | Large GWAS |
| rs9378248 | HLA-B | GWAS association (p=2.0e-36) | Large GWAS |
| rs7132655 | CCDC92 | GWAS association (p=9.0e-36) | Large GWAS |
| rs116843064 | ANGPTL4 | GWAS association (p=6.0e-34) | Large GWAS |
| rs1635852 | JAZF1 | GWAS association (p=1.0e-33) | Large GWAS |
| rs71556736 | — | GWAS association (p=2.0e-33) | Large GWAS |
| rs12154627 | — | GWAS association (p=2.0e-33) | Large GWAS |
| rs6873472 | CERT1 | GWAS association (p=3.0e-32) | Large GWAS |
| rs577721086 | RSPO3 | GWAS association (p=9.0e-31) | Large GWAS |
| rs2952294 | — | GWAS association (p=2.0e-30) | Large GWAS |
| rs11122450 | — | GWAS association (p=1.0e-29) | Large GWAS |
| rs11591147 | PCSK9 | GWAS association (p=5.0e-29) | Large GWAS |
| rs7111987 | — | GWAS association (p=8.0e-29) | Large GWAS |
| rs117760119 | — | GWAS association (p=2.0e-28) | Large GWAS |
| rs55714927 | — | GWAS association (p=9.0e-28) | Large GWAS |
| rs150844304 | — | GWAS association (p=2.0e-26) | Large GWAS |
| rs71468663 | — | GWAS association (p=3.0e-26) | Large GWAS |
| rs61805075 | — | GWAS association (p=6.0e-26) | Large GWAS |
| rs5860563 | — | GWAS association (p=1.0e-25) | Large GWAS |
| rs339969 | RORA | GWAS association (p=2.0e-25) | Large GWAS |
| rs7120118 | NR1H3 | GWAS association (p=3.0e-25) | Large GWAS |
| rs4792800 | TNFRSF13B | GWAS association (p=2.0e-24) | Large GWAS |
| rs4918722 | GPAM | GWAS association (p=6.0e-24) | Large GWAS |
| rs151288714 | — | GWAS association (p=7.0e-24) | Large GWAS |
| rs7554873 | — | GWAS association (p=1.0e-23) | Large GWAS |
| rs1487441 | — | GWAS association (p=1.0e-23) | Large GWAS |
| rs673548 | APOB | GWAS association (p=2.0e-23) | Large GWAS |
| rs17036170 | PPARG | GWAS association (p=2.0e-23) | Large GWAS |
| rs3184504 | SH2B3 | GWAS association (p=2.0e-23) | Large GWAS |
| rs1801689 | APOH | GWAS association (p=6.0e-23) | Large GWAS |
| rs34154818 | — | GWAS association (p=1.0e-22) | Large GWAS |
| rs4722551 | LOC105375199 | GWAS association (p=2.0e-22) | Large GWAS |
| rs112894876 | — | GWAS association (p=3.0e-22) | Large GWAS |
| rs73015021 | — | GWAS association (p=3.0e-22) | Large GWAS |
| rs5082 | APOA2 | GWAS association (p=4.0e-22) | Large GWAS |
| rs77243579 | CCDC162P | GWAS association (p=6.0e-22) | Large GWAS |
| rs10064506 | — | GWAS association (p=1.0e-21) | Large GWAS |
| rs78058190 | — | GWAS association (p=1.0e-21) | Large GWAS |
| rs9844972 | — | GWAS association (p=2.0e-21) | Large GWAS |
| rs4921915 | — | GWAS association (p=2.0e-21) | Large GWAS |
| rs3809113 | — | GWAS association (p=3.0e-21) | Large GWAS |
| rs2281721 | GALNT2 | GWAS association (p=7.0e-21) | Large GWAS |
| rs13137144 | DGKQ | GWAS association (p=1.0e-20) | Large GWAS |
| rs2665403 | — | GWAS association (p=1.0e-20) | Large GWAS |
| rs35175715 | SLC12A5 | GWAS association (p=1.0e-19) | Large GWAS |
| rs7137828 | ATXN2 | GWAS association (p=2.0e-19) | Large GWAS |
| rs3775228 | — | GWAS association (p=2.0e-19) | Large GWAS |
| rs13107325 | SLC39A8 | GWAS association (p=3.0e-19) | Large GWAS |
| rs2487294 | — | GWAS association (p=4.0e-19) | Large GWAS |
Showing the top 100 of 262 variants by evidence strength.
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.