Trait
SNPs associated with Type 1 diabetes mellitus
247 genetic variants across 79 genes have been associated with Type 1 diabetes mellitus in published research. Key genes include ADAM30, AIRE, ATXN2.
Associated variants247 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs9272346 | HLA-DQA1 | GWAS association (p=5.0e-134) | Meta-analysis |
| rs2476601 | PTPN22 | Increased type 1 diabetes risk | Meta-analysis |
| rs6679677 | PHTF1 | GWAS association (p=1.0e-40) | Meta-analysis |
| rs2292239 | ERBB3 | GWAS association (p=2.0e-20) | Meta-analysis |
| rs3087243 | CTLA4 | GWAS association (p=8.0e-11) | Meta-analysis |
| rs12708716 | CLEC16A | GWAS association (p=3.0e-18) | Meta-analysis |
| rs17696736 | NAA25 | GWAS association (p=6.0e-18) | Meta-analysis |
| rs5753037 | HORMAD2 | GWAS association (p=3.0e-16) | Meta-analysis |
| rs3825932 | CTSH | GWAS association (p=3.0e-15) | Meta-analysis |
| rs7202877 | CTRB2 | GWAS association (p=3.0e-15) | Meta-analysis |
| rs4788084 | — | GWAS association (p=3.0e-13) | Meta-analysis |
| rs9388489 | CENPW | GWAS association (p=4.0e-13) | Meta-analysis |
| rs11755527 | BACH2 | GWAS association (p=5.0e-12) | Meta-analysis |
| rs4763879 | CD69 | GWAS association (p=2.0e-11) | Meta-analysis |
| rs10517086 | LINC02357 | GWAS association (p=5.0e-10) | Meta-analysis |
| rs947474 | LINC02656 | GWAS association (p=4.0e-09) | Meta-analysis |
| rs4900384 | — | GWAS association (p=4.0e-09) | Meta-analysis |
| rs2664170 | GAB3 | GWAS association (p=8.0e-09) | Meta-analysis |
| rs229541 | C1QTNF6 | GWAS association (p=2.0e-08) | Meta-analysis |
| rs7574865 | STAT4 | Higher risk of type 1 diabetes mellitus | Meta-analysis |
| rs1544410 | VDR | Increased type 1 diabetes risk in non-European populations | Meta-analysis |
| rs9273363 | HLA-DQB1 | GWAS association (p=5.0e-138) | Major Consortium Study |
| rs1421085 | FTO | GWAS association (p=1.0e-34) | Major Consortium Study |
| rs7633675 | — | GWAS association (p=2.0e-25) | Major Consortium Study |
| rs10811661 | — | GWAS association (p=2.0e-24) | Major Consortium Study |
| rs10965250 | — | GWAS association (p=6.0e-23) | Major Consortium Study |
| rs3842755 | INS | GWAS association (p=1.0e-16) | Major Consortium Study |
| rs73239895 | — | GWAS association (p=2.0e-16) | Major Consortium Study |
| rs1801214 | WFS1 | GWAS association (p=2.0e-14) | Major Consortium Study |
| rs2972144 | — | GWAS association (p=1.0e-13) | Major Consortium Study |
| rs186568031 | — | GWAS association (p=2.0e-13) | Major Consortium Study |
| rs74770208 | ITPR3 | GWAS association (p=5.0e-13) | Major Consortium Study |
| rs3842754 | INS | GWAS association (p=8.0e-12) | Major Consortium Study |
| rs569848643 | — | GWAS association (p=8.0e-12) | Major Consortium Study |
| rs35198068 | — | GWAS association (p=2.0e-11) | Major Consortium Study |
| rs1329764748 | CSMD3 | GWAS association (p=3.0e-11) | Major Consortium Study |
| rs527381367 | LRP1B | GWAS association (p=3.0e-11) | Major Consortium Study |
| rs75486563 | PLPP1 | GWAS association (p=4.0e-11) | Major Consortium Study |
| rs537938132 | L3MBTL4 | GWAS association (p=4.0e-11) | Major Consortium Study |
| rs7903146 | TCF7L2 | GWAS association (p=4.0e-98) | Major Consortium Study |
| rs2237897 | KCNQ1 | GWAS association (p=2.0e-14) | Major Consortium Study |
| rs9273368 | HLA-DQB1-AS1 | GWAS association (p=2.0e-116) | Major Consortium Study |
| rs9273367 | HLA-DQB1-AS1 | GWAS association (p=6.0e-306) | Large GWAS |
| rs1770 | — | GWAS association (p=2.0e-232) | Large GWAS |
| rs689 | INS | GWAS association (p=5.0e-196) | Large GWAS |
| rs3184504 | SH2B3 | GWAS association (p=5.0e-49) | Large GWAS |
| rs653178 | ATXN2 | GWAS association (p=2.0e-44) | Large GWAS |
| rs3842753 | INS;INS-IGF2;TH | GWAS association (p=8.0e-44) | Large GWAS |
| rs9269173 | — | GWAS association (p=4.0e-42) | Large GWAS |
| rs61839660 | IL2RA | GWAS association (p=3.0e-39) | Large GWAS |
| rs12722495 | IL2RA | GWAS association (p=1.0e-38) | Large GWAS |
| rs705704 | RPS26 | GWAS association (p=2.0e-37) | Large GWAS |
| rs11066320 | PTPN11 | GWAS association (p=2.0e-33) | Large GWAS |
| rs705705 | RPS26 | GWAS association (p=4.0e-32) | Large GWAS |
| rs4929965 | — | GWAS association (p=2.0e-31) | Large GWAS |
| rs5763842 | HORMAD2 | GWAS association (p=1.0e-23) | Large GWAS |
| rs1004446 | IGF2 | GWAS association (p=4.0e-09) | Large GWAS |
| rs12927355 | — | GWAS association (p=7.0e-23) | Large GWAS |
| rs705699 | — | GWAS association (p=7.0e-20) | Large GWAS |
| rs8056814 | — | GWAS association (p=3.0e-19) | Large GWAS |
| rs7237497 | — | GWAS association (p=1.0e-18) | Large GWAS |
| rs2111485 | LOC105373724 | GWAS association (p=4.0e-18) | Large GWAS |
| rs1701704 | IKZF4 | GWAS association (p=5.0e-18) | Large GWAS |
| rs11203203 | UBASH3A | GWAS association (p=3.0e-17) | Large GWAS |
| rs541856133 | CEL | GWAS association (p=4.0e-17) | Large GWAS |
| rs2647044 | — | GWAS association (p=1.0e-16) | Large GWAS |
| rs7795896 | — | GWAS association (p=2.0e-16) | Large GWAS |
| rs1893217 | PTPN2 | GWAS association (p=1.0e-15) | Large GWAS |
| rs11203202 | — | GWAS association (p=1.0e-15) | Large GWAS |
| rs212408 | — | GWAS association (p=1.0e-15) | Large GWAS |
| rs60888743 | — | GWAS association (p=1.0e-15) | Large GWAS |
| rs1990760 | IFIH1 | GWAS association (p=2.0e-11) | Large GWAS |
| rs1052553 | MAPT | GWAS association (p=2.0e-15) | Large GWAS |
| rs722988 | — | GWAS association (p=3.0e-15) | Large GWAS |
| rs34536443 | TYK2 | GWAS association (p=4.0e-15) | Large GWAS |
| rs12416116 | — | GWAS association (p=4.0e-15) | Large GWAS |
| rs7754251 | — | GWAS association (p=4.0e-15) | Large GWAS |
| rs2542151 | — | GWAS association (p=1.0e-14) | Large GWAS |
| rs1876142 | — | GWAS association (p=2.0e-14) | Large GWAS |
| rs72848653 | — | GWAS association (p=2.0e-14) | Large GWAS |
| rs516246 | FUT2 | GWAS association (p=5.0e-14) | Large GWAS |
| rs55993634 | — | GWAS association (p=5.0e-14) | Large GWAS |
| rs72928038 | — | GWAS association (p=6.0e-14) | Large GWAS |
| rs1050979 | — | GWAS association (p=6.0e-14) | Large GWAS |
| rs11085725 | TYK2 | GWAS association (p=6.0e-14) | Large GWAS |
| rs34593439 | CTSH | GWAS association (p=9.0e-14) | Large GWAS |
| rs12665429 | — | GWAS association (p=1.0e-13) | Large GWAS |
| rs3842727 | TH | GWAS association (p=1.0e-13) | Large GWAS |
| rs8013873 | — | GWAS association (p=5.0e-13) | Large GWAS |
| rs75793288 | KIAA1109 | GWAS association (p=6.0e-13) | Large GWAS |
| rs1615504 | CD226 | GWAS association (p=1.0e-12) | Large GWAS |
| rs4820830 | — | GWAS association (p=1.0e-12) | Large GWAS |
| rs2229238 | IL6R | GWAS association (p=1.0e-12) | Large GWAS |
| rs1574285 | GLIS3 | GWAS association (p=2.0e-12) | Large GWAS |
| rs2269242 | PGM1 | GWAS association (p=5.0e-12) | Large GWAS |
| rs45485691 | — | GWAS association (p=6.0e-12) | Large GWAS |
| rs151233 | — | GWAS association (p=7.0e-12) | Large GWAS |
| rs2128344 | — | GWAS association (p=8.0e-12) | Large GWAS |
| rs56994090 | — | GWAS association (p=1.0e-11) | Large GWAS |
| rs11171739 | — | GWAS association (p=1.0e-11) | Large GWAS |
Showing the top 100 of 247 variants by evidence strength.
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.