Trait
SNPs associated with cholesterol to total lipids in small HDL percentage
162 genetic variants across 58 genes have been associated with cholesterol to total lipids in small HDL percentage in published research. Key genes include ABCA1, ABO, ADRB1.
Associated variants162 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs964184 | APOA5 | GWAS association (p=0.0e+00) | Large GWAS |
| rs117199990 | LPL | GWAS association (p=0.0e+00) | Large GWAS |
| rs2070895 | LIPC | GWAS association (p=0.0e+00) | Large GWAS |
| rs1065853 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs775677524 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs429358 | APOE | GWAS association (p=6.0e-274) | Large GWAS |
| rs28601761 | — | GWAS association (p=9.0e-244) | Large GWAS |
| rs183130 | CETP | GWAS association (p=3.0e-206) | Large GWAS |
| rs10468017 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs118147862 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs111784051 | TOMM40 | GWAS association (p=3.0e-200) | Large GWAS |
| rs1260326 | GCKR | GWAS association (p=5.0e-183) | Large GWAS |
| rs12740374 | CELSR2 | GWAS association (p=3.0e-172) | Large GWAS |
| rs2954038 | — | GWAS association (p=4.0e-156) | Large GWAS |
| rs173539 | — | GWAS association (p=2.0e-155) | Large GWAS |
| rs139974673 | — | GWAS association (p=4.0e-134) | Large GWAS |
| rs10455872 | LPA | GWAS association (p=2.0e-129) | Large GWAS |
| rs488490 | — | GWAS association (p=6.0e-122) | Large GWAS |
| rs17145750 | MLXIPL | GWAS association (p=2.0e-115) | Large GWAS |
| rs676210 | APOB | GWAS association (p=2.0e-106) | Large GWAS |
| rs102275 | TMEM258 | GWAS association (p=2.0e-103) | Large GWAS |
| rs77960347 | LIPG | GWAS association (p=6.0e-97) | Large GWAS |
| rs79236614 | — | GWAS association (p=3.0e-92) | Large GWAS |
| rs1168041 | DOCK7 | GWAS association (p=8.0e-70) | Large GWAS |
| rs3775228 | — | GWAS association (p=4.0e-67) | Large GWAS |
| rs4722551 | LOC105375199 | GWAS association (p=4.0e-63) | Large GWAS |
| rs704 | VTN | GWAS association (p=2.0e-59) | Large GWAS |
| rs684773 | — | GWAS association (p=5.0e-56) | Large GWAS |
| rs4921915 | — | GWAS association (p=4.0e-55) | Large GWAS |
| rs72836561 | — | GWAS association (p=5.0e-53) | Large GWAS |
| rs1037117 | — | GWAS association (p=3.0e-52) | Large GWAS |
| rs7599 | — | GWAS association (p=6.0e-50) | Large GWAS |
| rs55925606 | — | GWAS association (p=6.0e-47) | Large GWAS |
| rs7012814 | — | GWAS association (p=6.0e-45) | Large GWAS |
| rs1515104 | — | GWAS association (p=3.0e-43) | Large GWAS |
| rs17780834 | GBF1 | GWAS association (p=6.0e-42) | Large GWAS |
| rs200561116 | — | GWAS association (p=2.0e-40) | Large GWAS |
| rs6486122 | ARNTL | GWAS association (p=4.0e-40) | Large GWAS |
| rs2980888 | — | GWAS association (p=1.0e-39) | Large GWAS |
| rs2298058 | TGDS | GWAS association (p=2.0e-39) | Large GWAS |
| rs56156922 | — | GWAS association (p=2.0e-38) | Large GWAS |
| rs653178 | ATXN2 | GWAS association (p=2.0e-38) | Large GWAS |
| rs11146021 | INPP5E | GWAS association (p=5.0e-36) | Large GWAS |
| rs1560390 | — | GWAS association (p=2.0e-33) | Large GWAS |
| rs11924648 | — | GWAS association (p=3.0e-33) | Large GWAS |
| rs10838681 | NR1H3 | GWAS association (p=7.0e-33) | Large GWAS |
| rs6458869 | — | GWAS association (p=9.0e-33) | Large GWAS |
| rs116843064 | ANGPTL4 | GWAS association (p=5.0e-32) | Large GWAS |
| rs41289512 | — | GWAS association (p=5.0e-32) | Large GWAS |
| rs1128249 | — | GWAS association (p=1.0e-31) | Large GWAS |
| rs771193934 | — | GWAS association (p=5.0e-30) | Large GWAS |
| rs464605 | — | GWAS association (p=6.0e-30) | Large GWAS |
| rs11762784 | LOC105375508 | GWAS association (p=7.0e-30) | Large GWAS |
| rs11206374 | — | GWAS association (p=7.0e-30) | Large GWAS |
| rs117760119 | — | GWAS association (p=9.0e-30) | Large GWAS |
| rs2925979 | CMIP | GWAS association (p=2.0e-29) | Large GWAS |
| rs998584 | POLR1C | GWAS association (p=3.0e-29) | Large GWAS |
| rs367070 | — | GWAS association (p=6.0e-29) | Large GWAS |
| rs78025076 | — | GWAS association (p=5.0e-28) | Large GWAS |
| rs2966092 | — | GWAS association (p=2.0e-27) | Large GWAS |
| rs2307111 | POC5 | GWAS association (p=2.0e-26) | Large GWAS |
| rs4969179 | — | GWAS association (p=3.0e-26) | Large GWAS |
| rs7924036 | — | GWAS association (p=6.0e-26) | Large GWAS |
| rs10778215 | C12orf42 | GWAS association (p=8.0e-26) | Large GWAS |
| rs6658257 | DR1 | GWAS association (p=1.0e-25) | Large GWAS |
| rs10900807 | IRF1-AS1 | GWAS association (p=4.0e-25) | Large GWAS |
| rs141469619 | SIK3 | GWAS association (p=1.0e-24) | Large GWAS |
| rs2982521 | — | GWAS association (p=3.0e-24) | Large GWAS |
| rs2035816 | — | GWAS association (p=6.0e-24) | Large GWAS |
| rs6601924 | AKR1C4 | GWAS association (p=6.0e-24) | Large GWAS |
| rs7435918 | — | GWAS association (p=2.0e-23) | Large GWAS |
| rs2068888 | — | GWAS association (p=6.0e-23) | Large GWAS |
| rs4820268 | TMPRSS6 | GWAS association (p=1.0e-22) | Large GWAS |
| rs10901252 | ABO | GWAS association (p=1.0e-22) | Large GWAS |
| rs56738967 | LOC105371356 | GWAS association (p=2.0e-22) | Large GWAS |
| rs1800961 | HNF4A | GWAS association (p=3.0e-22) | Large GWAS |
| rs11228377 | — | GWAS association (p=8.0e-22) | Large GWAS |
| rs10773049 | ZNF664-RFLNA | GWAS association (p=2.0e-21) | Large GWAS |
| rs696825 | HNRNPK | GWAS association (p=2.0e-21) | Large GWAS |
| rs12117661 | — | GWAS association (p=5.0e-21) | Large GWAS |
| rs142674900 | CREB3L3 | GWAS association (p=5.0e-20) | Large GWAS |
| rs123602 | BAP1 | GWAS association (p=1.0e-19) | Large GWAS |
| rs4665710 | — | GWAS association (p=2.0e-19) | Large GWAS |
| rs756350040 | — | GWAS association (p=2.0e-19) | Large GWAS |
| rs174580 | FADS2 | GWAS association (p=1.0e-18) | Large GWAS |
| rs10242866 | — | GWAS association (p=1.0e-18) | Large GWAS |
| rs7639927 | — | GWAS association (p=1.0e-18) | Large GWAS |
| rs7139079 | — | GWAS association (p=2.0e-18) | Large GWAS |
| rs559355 | — | GWAS association (p=5.0e-18) | Large GWAS |
| rs10750766 | — | GWAS association (p=6.0e-18) | Large GWAS |
| rs12701713 | — | GWAS association (p=7.0e-18) | Large GWAS |
| rs6420185 | — | GWAS association (p=1.0e-17) | Large GWAS |
| rs3138493 | GADD45G | GWAS association (p=1.0e-17) | Large GWAS |
| rs1045241 | TNFAIP8 | GWAS association (p=1.0e-17) | Large GWAS |
| rs117733303 | — | GWAS association (p=4.0e-17) | Large GWAS |
| rs4820323 | MAFF | GWAS association (p=2.0e-16) | Large GWAS |
| rs2223053 | — | GWAS association (p=2.0e-16) | Large GWAS |
| rs2156552 | LOC105372112 | GWAS association (p=3.0e-16) | Large GWAS |
| rs34931250 | — | GWAS association (p=4.0e-16) | Large GWAS |
| rs10861678 | — | GWAS association (p=4.0e-16) | Large GWAS |
Showing the top 100 of 162 variants by evidence strength.
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.