Trait
SNPs associated with free cholesterol to total lipids in large LDL percentage
259 genetic variants across 78 genes have been associated with free cholesterol to total lipids in large LDL percentage in published research. Key genes include ABCA6, ABCG8, ABO.
Associated variants259 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs328 | LPL | GWAS association (p=0.0e+00) | Large GWAS |
| rs676210 | APOB | GWAS association (p=0.0e+00) | Large GWAS |
| rs782470771 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs964184 | APOA5 | GWAS association (p=0.0e+00) | Large GWAS |
| rs1065853 | — | GWAS association (p=0.0e+00) | Large GWAS |
| rs1260326 | GCKR | GWAS association (p=0.0e+00) | Large GWAS |
| rs28601761 | — | GWAS association (p=1.0e-292) | Large GWAS |
| rs174564 | FADS2 | GWAS association (p=6.0e-283) | Large GWAS |
| rs41290120 | — | GWAS association (p=1.0e-200) | Large GWAS |
| rs139974673 | — | GWAS association (p=6.0e-200) | Large GWAS |
| rs6065906 | — | GWAS association (p=2.0e-185) | Large GWAS |
| rs61679753 | TOMM40 | GWAS association (p=3.0e-178) | Large GWAS |
| rs79439217 | — | GWAS association (p=1.0e-176) | Large GWAS |
| rs117026536 | LPL | GWAS association (p=1.0e-157) | Large GWAS |
| rs55707100 | — | GWAS association (p=5.0e-146) | Large GWAS |
| rs35290825 | — | GWAS association (p=1.0e-136) | Large GWAS |
| rs72836561 | — | GWAS association (p=2.0e-127) | Large GWAS |
| rs11122450 | — | GWAS association (p=9.0e-108) | Large GWAS |
| rs10455872 | LPA | GWAS association (p=4.0e-107) | Large GWAS |
| rs56256300 | — | GWAS association (p=1.0e-105) | Large GWAS |
| rs13234131 | MLXIPL | GWAS association (p=7.0e-105) | Large GWAS |
| rs261342 | LIPC | GWAS association (p=9.0e-98) | Large GWAS |
| rs998584 | POLR1C | GWAS association (p=2.0e-89) | Large GWAS |
| rs4665710 | — | GWAS association (p=2.0e-88) | Large GWAS |
| rs11429307 | — | GWAS association (p=8.0e-76) | Large GWAS |
| rs117760119 | — | GWAS association (p=8.0e-73) | Large GWAS |
| rs429358 | APOE | GWAS association (p=6.0e-72) | Large GWAS |
| rs28383314 | — | GWAS association (p=2.0e-71) | Large GWAS |
| rs35363532 | — | GWAS association (p=2.0e-70) | Large GWAS |
| rs174537 | MYRF | GWAS association (p=7.0e-70) | Large GWAS |
| rs78058190 | — | GWAS association (p=8.0e-66) | Large GWAS |
| rs3996350 | LOC105375508 | GWAS association (p=2.0e-65) | Large GWAS |
| rs116843064 | ANGPTL4 | GWAS association (p=6.0e-57) | Large GWAS |
| rs3775228 | — | GWAS association (p=1.0e-56) | Large GWAS |
| rs4418728 | — | GWAS association (p=6.0e-56) | Large GWAS |
| rs540973884 | — | GWAS association (p=5.0e-54) | Large GWAS |
| rs7653249 | PCCB | GWAS association (p=1.0e-50) | Large GWAS |
| rs150844304 | — | GWAS association (p=1.0e-48) | Large GWAS |
| rs4722551 | LOC105375199 | GWAS association (p=5.0e-46) | Large GWAS |
| rs2792751 | GPAM | GWAS association (p=6.0e-46) | Large GWAS |
| rs10773049 | ZNF664-RFLNA | GWAS association (p=9.0e-45) | Large GWAS |
| rs577721086 | RSPO3 | GWAS association (p=9.0e-44) | Large GWAS |
| rs71468663 | — | GWAS association (p=1.0e-43) | Large GWAS |
| rs28588745 | — | GWAS association (p=2.0e-43) | Large GWAS |
| rs17513135 | PABPC4 | GWAS association (p=1.0e-40) | Large GWAS |
| rs821840 | CETP | GWAS association (p=1.0e-39) | Large GWAS |
| rs1106766 | R3HDM2 | GWAS association (p=1.0e-38) | Large GWAS |
| rs13108218 | — | GWAS association (p=1.0e-36) | Large GWAS |
| rs55776147 | — | GWAS association (p=1.0e-36) | Large GWAS |
| rs6073958 | — | GWAS association (p=2.0e-36) | Large GWAS |
| rs7733436 | CERT1 | GWAS association (p=4.0e-36) | Large GWAS |
| rs6800707 | NISCH | GWAS association (p=4.0e-35) | Large GWAS |
| rs10838681 | NR1H3 | GWAS association (p=3.0e-34) | Large GWAS |
| rs58542926 | TM6SF2 | GWAS association (p=5.0e-34) | Large GWAS |
| rs141469619 | SIK3 | GWAS association (p=4.0e-33) | Large GWAS |
| rs1495741 | — | GWAS association (p=2.0e-32) | Large GWAS |
| rs4149056 | SLCO1B1 | GWAS association (p=2.0e-32) | Large GWAS |
| rs4495740 | DOCK7 | GWAS association (p=3.0e-32) | Large GWAS |
| rs62271373 | — | GWAS association (p=5.0e-32) | Large GWAS |
| rs12928099 | PDXDC1 | GWAS association (p=3.0e-31) | Large GWAS |
| rs10761753 | JMJD1C | GWAS association (p=4.0e-31) | Large GWAS |
| rs4969143 | — | GWAS association (p=3.0e-30) | Large GWAS |
| rs79598313 | — | GWAS association (p=1.0e-29) | Large GWAS |
| rs2642438 | MTARC1 | GWAS association (p=2.0e-29) | Large GWAS |
| rs244418 | — | GWAS association (p=7.0e-29) | Large GWAS |
| rs597808 | ATXN2 | GWAS association (p=2.0e-28) | Large GWAS |
| rs2267373 | — | GWAS association (p=4.0e-28) | Large GWAS |
| rs1045241 | TNFAIP8 | GWAS association (p=2.0e-27) | Large GWAS |
| rs11635675 | — | GWAS association (p=6.0e-27) | Large GWAS |
| rs117733303 | — | GWAS association (p=3.0e-26) | Large GWAS |
| rs13107325 | SLC39A8 | GWAS association (p=4.0e-25) | Large GWAS |
| rs168622 | — | GWAS association (p=9.0e-25) | Large GWAS |
| rs10064506 | — | GWAS association (p=3.0e-24) | Large GWAS |
| rs11118310 | — | GWAS association (p=4.0e-24) | Large GWAS |
| rs62102718 | — | GWAS association (p=8.0e-24) | Large GWAS |
| rs79287178 | — | GWAS association (p=1.0e-23) | Large GWAS |
| rs28507491 | FAM47E | GWAS association (p=2.0e-23) | Large GWAS |
| rs8126001 | — | GWAS association (p=2.0e-23) | Large GWAS |
| rs7177289 | — | GWAS association (p=3.0e-23) | Large GWAS |
| rs11146021 | INPP5E | GWAS association (p=5.0e-23) | Large GWAS |
| rs2035816 | — | GWAS association (p=8.0e-23) | Large GWAS |
| rs2943654 | — | GWAS association (p=1.0e-22) | Large GWAS |
| rs62076439 | ZNF652 | GWAS association (p=2.0e-22) | Large GWAS |
| rs3936510 | — | GWAS association (p=2.0e-22) | Large GWAS |
| rs4976033 | — | GWAS association (p=6.0e-22) | Large GWAS |
| rs2908297 | — | GWAS association (p=7.0e-22) | Large GWAS |
| rs2045438 | — | GWAS association (p=2.0e-21) | Large GWAS |
| rs6458869 | — | GWAS association (p=2.0e-21) | Large GWAS |
| rs1801689 | APOH | GWAS association (p=4.0e-21) | Large GWAS |
| rs7140110 | — | GWAS association (p=4.0e-21) | Large GWAS |
| rs2723067 | LINC02576 | GWAS association (p=7.0e-21) | Large GWAS |
| rs3832016 | — | GWAS association (p=9.0e-21) | Large GWAS |
| rs12354253 | FAF1 | GWAS association (p=1.0e-20) | Large GWAS |
| rs1128249 | — | GWAS association (p=1.0e-20) | Large GWAS |
| rs2963468 | — | GWAS association (p=4.0e-20) | Large GWAS |
| rs3129755 | — | GWAS association (p=4.0e-20) | Large GWAS |
| rs296886 | HNRNPK | GWAS association (p=5.0e-20) | Large GWAS |
| rs1800961 | HNF4A | GWAS association (p=2.0e-19) | Large GWAS |
| rs2391902 | — | GWAS association (p=2.0e-19) | Large GWAS |
| rs17138358 | — | GWAS association (p=2.0e-19) | Large GWAS |
Showing the top 100 of 259 variants by evidence strength.
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.