Trait
SNPs associated with Crohn's disease
313 genetic variants across 117 genes have been associated with Crohn's disease in published research. Key genes include ADAD1, ADAM30, ADCY3.
Associated variants313 total
| rsid | Gene | Effect | Evidence |
|---|---|---|---|
| rs11742570 | — | GWAS association (p=7.0e-36) | Meta-analysis |
| rs2076756 | NOD2 | GWAS association (p=4.0e-69) | Meta-analysis |
| rs11209026 | IL23R | GWAS association (p=1.0e-64) | Meta-analysis |
| rs10761659 | — | GWAS association (p=4.0e-22) | Meta-analysis |
| rs4409764 | — | GWAS association (p=2.0e-20) | Meta-analysis |
| rs3792109 | ATG16L1 | GWAS association (p=7.0e-41) | Meta-analysis |
| rs4077515 | CARD9 | GWAS association (p=1.0e-36) | Meta-analysis |
| rs2413583 | — | GWAS association (p=1.0e-26) | Meta-analysis |
| rs3197999 | APEH | GWAS association (p=6.0e-17) | Meta-analysis |
| rs1250550 | ZMIZ1 | GWAS association (p=1.0e-30) | Meta-analysis |
| rs3024505 | — | GWAS association (p=2.0e-14) | Meta-analysis |
| rs1893217 | PTPN2 | GWAS association (p=1.0e-14) | Meta-analysis |
| rs3091315 | — | GWAS association (p=2.0e-13) | Meta-analysis |
| rs3764147 | LACC1 | GWAS association (p=2.0e-13) | Meta-analysis |
| rs11564258 | MUC19 | GWAS association (p=6.0e-21) | Meta-analysis |
| rs12521868 | IRF1-AS1 | GWAS association (p=1.0e-20) | Meta-analysis |
| rs17293632 | SMAD3 | GWAS association (p=3.0e-19) | Meta-analysis |
| rs7714584 | IRGM | GWAS association (p=8.0e-19) | Meta-analysis |
| rs8005161 | GPR65 | GWAS association (p=4.0e-18) | Meta-analysis |
| rs6651252 | LINC00824 | GWAS association (p=4.0e-18) | Meta-analysis |
| rs1819658 | — | GWAS association (p=9.0e-17) | Meta-analysis |
| rs212388 | LOC112267968 | GWAS association (p=2.0e-11) | Meta-analysis |
| rs181359 | UBE2L3 | GWAS association (p=5.0e-16) | Meta-analysis |
| rs3810936 | TNFSF15 | GWAS association (p=1.0e-15) | Meta-analysis |
| rs7517810 | — | GWAS association (p=2.0e-15) | Meta-analysis |
| rs4809330 | ZGPAT | GWAS association (p=3.0e-15) | Meta-analysis |
| rs10495903 | THADA | GWAS association (p=2.0e-14) | Meta-analysis |
| rs2838519 | — | GWAS association (p=2.0e-14) | Meta-analysis |
| rs6556412 | LOC285626 | GWAS association (p=5.0e-14) | Meta-analysis |
| rs10758669 | — | GWAS association (p=1.0e-13) | Meta-analysis |
| rs1456896 | — | GWAS association (p=1.0e-08) | Meta-analysis |
| rs3180018 | — | GWAS association (p=2.0e-13) | Meta-analysis |
| rs7423615 | SP140 | GWAS association (p=3.0e-13) | Meta-analysis |
| rs7927997 | — | GWAS association (p=6.0e-13) | Meta-analysis |
| rs12720356 | TYK2 | GWAS association (p=1.0e-12) | Meta-analysis |
| rs2058660 | IL18RAP | GWAS association (p=2.0e-12) | Meta-analysis |
| rs4871611 | LINC02964 | GWAS association (p=2.0e-12) | Meta-analysis |
| rs359457 | — | GWAS association (p=3.0e-12) | Meta-analysis |
| rs415890 | — | GWAS association (p=3.0e-12) | Meta-analysis |
| rs6908425 | CDKAL1 | GWAS association (p=9.0e-10) | Meta-analysis |
| rs7702331 | LOC105379031 | GWAS association (p=6.0e-12) | Meta-analysis |
| rs713875 | HORMAD2 | GWAS association (p=7.0e-12) | Meta-analysis |
| rs281379 | MAMSTR | GWAS association (p=7.0e-12) | Meta-analysis |
| rs740495 | SBNO2 | GWAS association (p=8.0e-12) | Meta-analysis |
| rs1736020 | LOC101927745 | GWAS association (p=9.0e-12) | Meta-analysis |
| rs151181 | CLN3 | GWAS association (p=2.0e-11) | Meta-analysis |
| rs102275 | TMEM258 | GWAS association (p=2.0e-11) | Meta-analysis |
| rs1799964 | LTA | GWAS association (p=4.0e-11) | Meta-analysis |
| rs780093 | GCKR | GWAS association (p=5.0e-11) | Meta-analysis |
| rs2549794 | ERAP1 | GWAS association (p=1.0e-10) | Meta-analysis |
| rs1847472 | BACH2 | GWAS association (p=5.0e-09) | Meta-analysis |
| rs4902642 | — | GWAS association (p=2.0e-10) | Meta-analysis |
| rs2062305 | LINC02341 | GWAS association (p=5.0e-10) | Meta-analysis |
| rs694739 | LOC102723878 | GWAS association (p=6.0e-10) | Meta-analysis |
| rs13428812 | DNMT3A | GWAS association (p=9.0e-10) | Meta-analysis |
| rs12242110 | CCNY | GWAS association (p=1.0e-09) | Meta-analysis |
| rs2872507 | — | GWAS association (p=2.0e-09) | Meta-analysis |
| rs11167764 | LOC105378204 | GWAS association (p=2.0e-09) | Meta-analysis |
| rs12722489 | IL2RA | GWAS association (p=3.0e-09) | Meta-analysis |
| rs2476601 | PTPN22 | GWAS association (p=4.0e-09) | Meta-analysis |
| rs6738825 | PLCL1 | GWAS association (p=4.0e-09) | Meta-analysis |
| rs10181042 | PUS10 | GWAS association (p=7.0e-09) | Meta-analysis |
| rs2797685 | PER3 | GWAS association (p=7.0e-09) | Meta-analysis |
| rs13073817 | — | GWAS association (p=7.0e-09) | Meta-analysis |
| rs17309827 | SLC22A23 | GWAS association (p=7.0e-09) | Meta-analysis |
| rs1998598 | DENND1B | GWAS association (p=9.0e-09) | Meta-analysis |
| rs736289 | — | GWAS association (p=9.0e-09) | Meta-analysis |
| rs11871801 | CAVIN1 | GWAS association (p=3.0e-08) | Meta-analysis |
| rs6568421 | — | GWAS association (p=4.0e-08) | Meta-analysis |
| rs2066845 | NOD2 | Higher Crohn's disease risk | Meta-analysis |
| rs2066844 | NOD2 | Higher Crohn's disease risk | Meta-analysis |
| rs1891664 | IL23R | GWAS association (p=1.0e-15) | Major Consortium Study |
| rs576910164 | RBMS2 | GWAS association (p=3.0e-15) | Major Consortium Study |
| rs115378818 | TSBP1 | GWAS association (p=4.0e-15) | Major Consortium Study |
| rs2066847 | NOD2 | GWAS association (p=3.0e-24) | Large GWAS |
| rs7517847 | IL23R | GWAS association (p=1.0e-159) | Large GWAS |
| rs56211063 | — | GWAS association (p=4.0e-95) | Large GWAS |
| rs10817678 | — | GWAS association (p=1.0e-76) | Large GWAS |
| rs12994997 | ATG16L1 | GWAS association (p=4.0e-70) | Large GWAS |
| rs11465804 | IL23R | GWAS association (p=7.0e-63) | Large GWAS |
| rs7765379 | — | GWAS association (p=9.0e-59) | Large GWAS |
| rs17622378 | — | GWAS association (p=7.0e-56) | Large GWAS |
| rs6478106 | — | GWAS association (p=5.0e-46) | Large GWAS |
| rs2155219 | — | GWAS association (p=6.0e-46) | Large GWAS |
| rs11741861 | ZNF300 | GWAS association (p=6.0e-44) | Large GWAS |
| rs10781499 | CARD9 | GWAS association (p=8.0e-43) | Large GWAS |
| rs56167332 | — | GWAS association (p=2.0e-41) | Large GWAS |
| rs75900472 | — | GWAS association (p=4.0e-34) | Large GWAS |
| rs3828309 | ATG16L1 | GWAS association (p=2.0e-32) | Large GWAS |
| rs116392568 | — | GWAS association (p=7.0e-32) | Large GWAS |
| rs11743851 | — | GWAS association (p=1.0e-31) | Large GWAS |
| rs9264942 | HLA-C | GWAS association (p=5.0e-28) | Large GWAS |
| rs7554511 | INAVA | GWAS association (p=2.0e-27) | Large GWAS |
| rs4613763 | — | GWAS association (p=7.0e-27) | Large GWAS |
| rs11010067 | LOC124902409 | GWAS association (p=1.0e-26) | Large GWAS |
| rs224090 | — | GWAS association (p=4.0e-26) | Large GWAS |
| rs12422544 | — | GWAS association (p=4.0e-25) | Large GWAS |
| rs6478109 | TNFSF15 | GWAS association (p=5.0e-25) | Large GWAS |
| rs2024092 | SBNO2 | GWAS association (p=7.0e-25) | Large GWAS |
| rs2823286 | LOC101927745 | GWAS association (p=1.0e-24) | Large GWAS |
Showing the top 100 of 313 variants by evidence strength.
Associations aggregated from the GWAS Catalog and curated literature. Informational only — not medical advice.